Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1002276

https://doi.org/10.1371/journal.pcbi.1002276

BeadArray Expression Analysis Using Bioconductor

Cited by: 50
Author(s): Matthew E. Ritchie, Mark J. Dunning, Mike L. Smith, Wei Shi, Andy G. Lynch
Published: about 13 years ago

Software Mentions 11

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: arrayQualityMetrics
Quality metrics report for microarray data sets
Papers that mentioned: 190
bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
Papers that mentioned: 94
bioconductor: BeadDataPackR
Compression of Illumina BeadArray data
Papers that mentioned: 2
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: GSEAlm
Linear Model Toolset for Gene Set Enrichment Analysis
Papers that mentioned: 6
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: RobLoxBioC
Infinitesimally Robust Estimators for Preprocessing -Omics Data
Papers that mentioned: 3