Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s40168-019-0658-x
https://doi.org/10.1186/s40168-019-0658-x
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
Cited by: 124
Author(s): Erik L. Clarke, Louis J. Taylor, Chunyu Zhao, Andrew Jesse Connell, Jung‐Jin Lee, Bryton Fett, Frederic D. Bushman, Kyle Bittinger
Published: over 5 years ago
Software Mentions 11
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting SetsPapers that mentioned: 319
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)Papers that mentioned: 989
pypi: bzip2
Papers that mentioned: 58pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
pypi: grabseqs
Easily download reads from next-gen sequencing repositories like NCBI SRAPapers that mentioned: 2
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306
pypi: tadpole
flask starter, support gunicorn start,stop,reload script and restful view , auto restful sqlalchemy model, auth and permissionPapers that mentioned: 5