Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02096-y

https://doi.org/10.1186/s13059-020-02096-y

Demystifying “drop-outs” in single-cell UMI data

Cited by: 66
Author(s): Tae Hyun Kim, Xiang Zhou, Mengjie Chen
Published: over 4 years ago

Software Mentions 9

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: HIPPO
Heterogeneity-Induced Pre-Processing tOol
Papers that mentioned: 8
cran: DCA
Dynamic Correlation Analysis for High Dimensional Data
Papers that mentioned: 128
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: pscl
Political Science Computational Laboratory
Papers that mentioned: 185
cran: SAVER
Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: DCA
Count autoencoder for scRNA-seq denoising
Papers that mentioned: 128