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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-020-02071-7

https://doi.org/10.1186/s13059-020-02071-7

Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

Cited by: 56
Author(s): Ralph Patrick, David T. Humphreys, Vaibhao Janbandhu, Alicia Oshlack, Joshua W. K. Ho, Richard P. Harvey, Kitty Lo
Published: about 5 years ago

Software Mentions 13

bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
Very Likely Science (100)
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
Very Likely Science (100)
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: regtools
Regression and Classification Tools
Papers that mentioned: 6
Very Likely Science (100)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
Very Likely Science (75)
pypi: mle
Utilities for common DS/ML/AI tasks.
Papers that mentioned: 7
Very Likely Science (65)
pypi: nls
NLS: Non-Linear Schrodinger equation solver.
Papers that mentioned: 102
Likely Science (55)
pypi: regtools
High-level Regression Utilities
Papers that mentioned: 6
Very Likely Science (95)