Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1642-2

https://doi.org/10.1186/s13059-019-1642-2

Identification of transcription factor binding sites using ATAC-seq

Cited by: 284
Author(s): Li Z, Marcel H. Schulz, Thomas Look, Matthias Begemann, Martin Zenke, Ivan G. Costa
Published: over 5 years ago

Software Mentions 3

cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: DeFCoM
A supervised learning genomic footprinter
Papers that mentioned: 3
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203