Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-014-0550-8

https://doi.org/10.1186/s13059-014-0550-8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Cited by: 49,504
Author(s): Michael I. Love, Wolfgang Huber, Simon Anders
Published: about 10 years ago

Software Mentions 16

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: cqn
Conditional quantile normalization
Papers that mentioned: 14
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: DSS
Dispersion shrinkage for sequencing data
Papers that mentioned: 288
bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq data
Papers that mentioned: 17
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-Seq
Papers that mentioned: 61
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: robust
Port of the S+ "Robust Library"
Papers that mentioned: 19
cran: samr
SAM: Significance Analysis of Microarrays
Papers that mentioned: 114
pypi: robust
Robust computational geometry predicates.
Papers that mentioned: 19