Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13040-017-0150-8

https://doi.org/10.1186/s13040-017-0150-8

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

Cited by: 15
Author(s): Bork A. Berghoff, Torgny Karlsson, Thomas Källman, E. Gerhart H. Wagner, Manfred Grabherr
Published: about 7 years ago

Software Mentions 7

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: Mfuzz

Soft clustering of time series gene expression data
Papers that mentioned: 160

cran: rlog

A Simple, Opinionated Logging Utility
Papers that mentioned: 1

pypi: Moose

Your manager for endless iterative tasks.
Papers that mentioned: 21

pypi: rlog

Small handler and formatter for using python logging with Redis
Papers that mentioned: 1

pypi: voom

A python message bus that you can put 4 million volts through.
Papers that mentioned: 136