Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-020-03866-y
https://doi.org/10.1186/s12859-020-03866-y
Increased biological relevance of transcriptome analyses in human skeletal muscle using a model-specific pipeline
Cited by: 7
Author(s): Yusuf Khan, Daniel Hammarström, Bent R. Rønnestad, Stian Ellefsen, Rafi Ahmad
Published: almost 4 years ago
Software Mentions 10
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
cran: DHARMa
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression ModelsPapers that mentioned: 194
cran: glmmTMB
Generalized Linear Mixed Models using Template Model BuilderPapers that mentioned: 373
cran: tmod
Feature Set Enrichment Analysis for Metabolomics and TranscriptomicsPapers that mentioned: 18
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.Papers that mentioned: 307