Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-3090-0

https://doi.org/10.1186/s12859-019-3090-0

CSA: a web service for the complete process of ChIP-Seq analysis

Cited by: 2
Author(s): Min Li, Li Tang, Fang‐Xiang Wu, Yi Pan, Jianxin Wang
Published: almost 5 years ago

Software Mentions 8

bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: AREM
Aligning Reads by Expectation-Maximization. Based on MACS (Model Based Analysis for ChIP-Seq data)
Papers that mentioned: 3
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: lc
Beta reducer and shorthand representer for the λ-calculus
Papers that mentioned: 3
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: PePr
Peak-calling and Prioritization pipeline for replicated ChIP-Seq data
Papers that mentioned: 18