Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2330-z

https://doi.org/10.1186/s12859-018-2330-z

outbreaker2: a modular platform for outbreak reconstruction

Cited by: 50
Author(s): Finlay Campbell, Xavier Didelot, Richard G. FitzJohn, Neil Ferguson, Anne Cori, Thibaut Jombart
Published: about 6 years ago

Software Mentions 6

cran: config
Manage Environment Specific Configuration Values
Papers that mentioned: 33
cran: outbreaker2
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Papers that mentioned: 7
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: TransPhylo
Inference of Transmission Tree from a Dated Phylogeny
Papers that mentioned: 25
pypi: config
A hierarchical, easy-to-use, powerful configuration module for Python
Papers that mentioned: 33
pypi: outbreaker
Explore WHO Disease Outbreak News
Papers that mentioned: 8