Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-015-0453-z

https://doi.org/10.1186/s12859-015-0453-z

MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis

Cited by: 41
Author(s): Koki Tsuyuzaki, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki, Itoshi Nikaido
Published: over 9 years ago

Software Mentions 13

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: MeSHDbi
DBI to construct MeSH-related package from sqlite file
Papers that mentioned: 1
bioconductor: meshr
Tools for conducting enrichment analysis of MeSH
Papers that mentioned: 6
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
Papers that mentioned: 124
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
cran: SEA
Segregation Analysis
Papers that mentioned: 238
cran: tagcloud
Tag Clouds
Papers that mentioned: 2
pypi: CUI
Papers that mentioned: 5
pypi: db
Databases for Humans
Papers that mentioned: 108
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285