Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1756-0500-3-81

https://doi.org/10.1186/1756-0500-3-81

Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

Cited by: 17
Author(s): Colin S. Gillespie, Guiyuan Lei, Richard J. Boys, Amanda Greenall, Darren J. Wilkinson
Published: over 14 years ago

Software Mentions 11

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: affyPLM

Methods for fitting probe-level models
Papers that mentioned: 162

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: gcrma

Background Adjustment Using Sequence Information
Papers that mentioned: 186

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: Mfuzz

Soft clustering of time series gene expression data
Papers that mentioned: 160

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

pypi: db

Databases for Humans
Papers that mentioned: 108

pypi: exp

Python tool do design and run experiments with global optimisation and grid search
Papers that mentioned: 14

pypi: fac

a GUI project for calculating the factorial of the number you input
Papers that mentioned: 2

pypi: heatmap

Module to create heatmaps
Papers that mentioned: 285