Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1128/mSystems.00474-21

https://doi.org/10.1128/mSystems.00474-21

Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics

Cited by: 12
Author(s): Elizabeth A. McDaniel, Francisco Moya-Flores, Natalie K. Beach, Pamela Y. Camejo, Ben O. Oyserman, Matthew Kizaric, Eng Hoe Khor, Daniel R. Noguera, Katherine D. McMahon
Published: almost 4 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: ComplexUpset
Create Complex UpSet Plots Using 'ggplot2' Components
Papers that mentioned: 3
Very Likely Science (100)
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
Very Likely Science (93)
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
Very Likely Science (100)
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
Very Likely Science (100)
pypi: barrnap
python package for barrnap
Papers that mentioned: 56
Very Likely Science (80)
pypi: ete3
A Python Environment for (phylogenetic) Tree Exploration
Papers that mentioned: 28
Very Likely Science (100)
pypi: PyParanoid
Fast and scalable homolog detection for thousands of genomes
Papers that mentioned: 3
Very Likely Science (77)
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
Very Likely Science (100)