Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00474-21

https://doi.org/10.1128/mSystems.00474-21

Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics

Cited by: 12
Author(s): Elizabeth A. McDaniel, Francisco Moya-Flores, Natalie K. Beach, Pamela Y. Camejo, Ben O. Oyserman, Matthew Kizaric, Eng Hoe Khor, Daniel R. Noguera, Katherine D. McMahon
Published: about 3 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: ComplexUpset
Create Complex UpSet Plots Using 'ggplot2' Components
Papers that mentioned: 3
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: barrnap
python package for barrnap
Papers that mentioned: 56
pypi: ete3
A Python Environment for (phylogenetic) Tree Exploration
Papers that mentioned: 28
pypi: PyParanoid
Fast and scalable homolog detection for thousands of genomes
Papers that mentioned: 3
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740