Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/jcmm.16773

https://doi.org/10.1111/jcmm.16773

Cited by: 3
Author(s): Qi Zhang, Manchao Kuang, Haiyin An, Yajing Zhang, Kai Zhang, Feng Li, Lei Zhang, Shujun Cheng
Published: almost 3 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: GOplot
Visualization of Functional Analysis Data
Papers that mentioned: 269
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics
Papers that mentioned: 18
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: gene
gene
Papers that mentioned: 185
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: tmod
A tool to work with tModLoader .tmod files.
Papers that mentioned: 18