Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1093/gigascience/giz022

https://doi.org/10.1093/gigascience/giz022

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data

Cited by: 41
Author(s): Mark Ziemann, Antony Kaspi, Assam El‐Osta
Published: over 6 years ago

Software Mentions 6

bioconductor: BgeeDB
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
Papers that mentioned: 4
Very Likely Science (100)
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
Very Likely Science (85)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: heatmap
Module to create heatmaps
Papers that mentioned: 285
Very Likely Science (65)