Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giab039

https://doi.org/10.1093/gigascience/giab039

A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen

Cited by: 8
Author(s): Daniela Gaio, Matthew Z. DeMaere, Kay Anantanawat, G. J. Eamens, Mengmeng Liu, Tiziana Zingali, Linda Falconer, Toni A. Chapman, Steven P. Djordjevic, Aaron E. Darling
Published: over 3 years ago

Software Mentions 14

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: pairwiseCI
Confidence Intervals for Two Sample Comparisons
Papers that mentioned: 2
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: readxl
Read Excel Files
Papers that mentioned: 139
cran: splitstackshape
Stack and Reshape Datasets After Splitting Concatenated Values
Papers that mentioned: 9
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197