Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa111

https://doi.org/10.1093/gigascience/giaa111

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

Cited by: 134
Author(s): Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy, Boris Dimitrov, Greg Dingle, Rebecca Egger, Julie Han, Olivia B. Holmes, Yun Fang Juan, Ryan J. King, Andrey Kislyuk, Michael Lin, Maria Mariano, Todd Morse, Lucia V. Reynoso, David Rissato Cruz, Jonathan Sheu, Jennifer Tang, James Wang, Mark A. Zhang, Emily Zhong, Vida Ahyong, Sreyngim Lay, Sophana Chea, Jennifer A. Bohl, Jessica E. Manning, Cristina M. Tato, Joseph L. DeRisi
Published: about 4 years ago

Software Mentions 4

cran: bench
High Precision Timing of R Expressions
Papers that mentioned: 4
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bench
Benchmark resources usage
Papers that mentioned: 4
pypi: InSilicoSeq
a sequencing simulator
Papers that mentioned: 17