Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa102

https://doi.org/10.1093/gigascience/giaa102

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

Cited by: 15
Author(s): Mehmet Tekman, Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, D. L. Clements, Fidel Ramírez, Graham Etherington, Hans-Rudolf Hotz, Jelle Scholtalbers, Jonathan Manning, Léa Bellenger, Maria A. Doyle, Mohammad Heydarian, Ni Huang, Nicola Soranzo, Pablo Moreno, Stefan Mautner, Irene Papatheodorou, Anton Nekrutenko, James Taylor, Daniel Blankenberg, Rolf Backofen, Björn Grüning
Published: about 4 years ago

Software Mentions 12

bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
bioconductor: scPipe
Pipeline for single cell multi-omic data pre-processing
Papers that mentioned: 7
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
cran: FateID
Quantification of Fate Bias in Multipotent Progenitors
Papers that mentioned: 2
cran: IDE
Integro-Difference Equation Spatio-Temporal Models
Papers that mentioned: 81
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: SeuratObject
Data Structures for Single Cell Data
Papers that mentioned: 2
cran: SPARQL
SPARQL client
Papers that mentioned: 660
pypi: cellxgene
Web application for exploration of large scale scRNA-seq datasets
Papers that mentioned: 4
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
pypi: Wallace
An API for modeling data with psycopg2, redis-py, and pymongo.
Papers that mentioned: 6