Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/database/bay027

https://doi.org/10.1093/database/bay027

Maser: one-stop platform for NGS big data from analysis to visualization

Cited by: 38
Author(s): Sonoko Kinjo, Norikazu Monma, Sadahiko Misu, Norikazu Kitamura, Junichi Imoto, Kazutoshi Yoshitake, Takashi Gojobori, Kazuho Ikeo
Published: almost 7 years ago

Software Mentions 10

bioconductor: cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Papers that mentioned: 83
bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Papers that mentioned: 697
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: MIRA
Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856
cran: GE
General Equilibrium Modeling
Papers that mentioned: 401
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: CUI
Papers that mentioned: 5
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017