Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/database/bay027

https://doi.org/10.1093/database/bay027

Cited by: 38
Author(s): Sonoko Kinjo, Norikazu Monma, Sadahiko Misu, Norikazu Kitamura, Junichi Imoto, Kazutoshi Yoshitake, Takashi Gojobori, Kazuho Ikeo
Published: over 6 years ago

Software Mentions 10

bioconductor: cummeRbund

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Papers that mentioned: 83

bioconductor: DEGseq

Identify Differentially Expressed Genes from RNA-seq data
Papers that mentioned: 697

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: MIRA

Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856

cran: GE

General Equilibrium Modeling
Papers that mentioned: 401

pypi: browser

A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125

pypi: CUI

Papers that mentioned: 5

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: shell

A better way to run shell commands in Python.
Papers that mentioned: 207

pypi: TopHat

TopHat Platform
Papers that mentioned: 5,017