Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep38411

https://doi.org/10.1038/srep38411

Distinct epigenomes in CD4+ T cells of newborns, middle-ages and centenarians

Cited by: 34
Author(s): Ming Zhao, Jian Qin, Hang Yin, Yixin Tan, Wei Liao, Qian Liu, Shuangyan Luo, Min He, Gongping Liang, Yajing Shi, Qing Zhang, Wenjun Cai, Guangliang Yin, Yin Zhou, Jing Wang, Mengying Li, Yi Huang, Aiyun Liu, Haijian Wu, Zhiyong Zhang, Qianjin Lu
Published: about 8 years ago

Software Mentions 8

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: BCRANK
Predicting binding site consensus from ranked DNA sequences
Papers that mentioned: 6
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233