Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-021-88698-3

https://doi.org/10.1038/s41598-021-88698-3

In-depth transcriptomic analysis of human retina reveals molecular mechanisms underlying diabetic retinopathy

Cited by: 23
Author(s): Kolja Becker, H. Klein, Eric J. Simon, Coralie Viollet, Christian Haslinger, Germán Leparc, Christian Schultheis, Victor Chong, Markus H. Kuehn, Francesc Fernández-Albert, Remko A. Bakker
Published: over 3 years ago

Software Mentions 11

bioconductor: DEGreport
Report of DEG analysis
Papers that mentioned: 6
bioconductor: dupRadar
Assessment of duplication rates in RNA-Seq datasets
Papers that mentioned: 23
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MEIGOR
MEIGO - MEtaheuristics for bIoinformatics Global Optimization
Papers that mentioned: 1
bioconductor: miRBaseConverter
A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Papers that mentioned: 10
bioconductor: pcaMethods
A collection of PCA methods
Papers that mentioned: 129
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: kraken
OCR/HTR engine for all the languages
Papers that mentioned: 24