Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-019-55434-x

https://doi.org/10.1038/s41598-019-55434-x

QuantSeq. 3′ Sequencing combined with Salmon provides a fast, reliable approach for high throughput RNA expression analysis

Cited by: 28
Author(s): Susan M. Corley, Niamh M. Troy, Anthony Bosco, Marc R. Wilkins
Published: almost 5 years ago

Software Mentions 9

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: FGNet
Functional Gene Networks derived from biological enrichment analyses
Papers that mentioned: 7
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017