Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.csbj.2020.06.023

https://doi.org/10.1016/j.csbj.2020.06.023

Cited by: 10
Author(s): Susan Idicula‐Thomas, Ulka Gawde, Sameeksha Bhaye, Khushal Pokar, Gary D. Bader
Published: over 4 years ago

Software Mentions 8

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: oligo

Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204

pypi: gse

extract metadata and dataset from GEO Series Matrix format data
Papers that mentioned: 7

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: oligo

UNOFFICIAL Python client for i-DE
Papers that mentioned: 204