Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1007/s00401-021-02343-x

https://doi.org/10.1007/s00401-021-02343-x

Cross-platform transcriptional profiling identifies common and distinct molecular pathologies in Lewy body diseases

Cited by: 23
Author(s): Rahel Feleke, Regina H. Reynolds, Amy M. Smith, Bension S. Tilley, Sarah A. Gagliano Taliun, John Hardy, Paul M. Matthews, Steve Gentleman, David R. Owen, Michael R. Johnson, Prashant K. Srivastava, Mina Ryten
Published: over 3 years ago

Software Mentions 14

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: EWCE
Expression Weighted Celltype Enrichment
Papers that mentioned: 13
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: cluster

Papers that mentioned: 416
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: scaden
Cell type deconvolution using single cell data
Papers that mentioned: 1