An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1007/s00401-021-02343-x

https://doi.org/10.1007/s00401-021-02343-x

Cross-platform transcriptional profiling identifies common and distinct molecular pathologies in Lewy body diseases

Cited by: 23
Author(s): Rahel Feleke, Regina H. Reynolds, Amy M. Smith, Bension S. Tilley, Sarah A. Gagliano Taliun, John Hardy, Paul M. Matthews, Steve Gentleman, David R. Owen, Michael R. Johnson, Prashant K. Srivastava, Mina Ryten
Published: about 4 years ago

Software Mentions 14

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: EWCE
Expression Weighted Celltype Enrichment
Papers that mentioned: 13
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
Very Likely Science (100)
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
Very Likely Science (90)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
Very Likely Science (75)
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
Very Likely Science (65)
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
Very Likely Science (80)
pypi: scaden
Cell type deconvolution using single cell data
Papers that mentioned: 1
Very Likely Science (100)