Packages with Software Mentions in Scientific Papers

cran: round

Rounding to Decimal Digits
Papers that mentioned: 2

Very Likely Science (75)

cran: Routliers

Robust Outliers Detection
Papers that mentioned: 2

Very Likely Science (100)

pypi: DIF

A small example package
Papers that mentioned: 2

Very Likely Science (65)

pypi: mic

Model Insertion Checker
Papers that mentioned: 2

Very Likely Science (100)

pypi: rss

A Python API for controlling redis master and slave via sentinel.
Papers that mentioned: 2

Very Likely Science (65)

pypi: rstoolbox

management and analysis of design populations
Papers that mentioned: 2

Very Likely Science (90)

pypi: Microbe

Micro Blog Engine inspired by Pelican and powered by Flask
Papers that mentioned: 2

Likely Science (40)

pypi: geom3d

Geometric Modeling on 3D Data
Papers that mentioned: 2

Very Likely Science (87)

pypi: geoscale

Python library for scale-based spatial analysis
Papers that mentioned: 2

Very Likely Science (95)

pypi: peyotl

Library for interacting with Open Tree of Life resources
Papers that mentioned: 2

Very Likely Science (80)

pypi: CGNS

Pythonbindings for CGNS library
Papers that mentioned: 2

Very Likely Science (80)

pypi: ruffus

Light-weight Python Computational Pipeline Management
Papers that mentioned: 2

Very Likely Science (90)

pypi: chainmail

Sending email is hard. Let's go shopping!
Papers that mentioned: 2

Likely Science (40)

cran: proftools

Profile Output Processing Tools for R
Papers that mentioned: 2

Very Likely Science (83)

cran: projpred

Projection Predictive Feature Selection
Papers that mentioned: 2

Very Likely Science (75)

pypi: Chamaeleo

library for the well accepted coding schemes of DNA storage
Papers that mentioned: 2

Very Likely Science (71)

cran: protoclust

Hierarchical Clustering with Prototypes
Papers that mentioned: 2

Very Likely Science (83)

pypi: mictools

MICtools
Papers that mentioned: 2

Very Likely Science (100)

pypi: check

Check your server like a boss.
Papers that mentioned: 2

Very Likely Science (65)

pypi: gflow

Command line tool for running Galaxy workflows.
Papers that mentioned: 2

Very Likely Science (100)

cran: Pstat

Assessing Pst Statistics
Papers that mentioned: 2

Very Likely Science (85)

pypi: iggy

A tool for consistency based analysis of influence graphs and observed systems behavior.
Papers that mentioned: 2

Very Likely Science (100)

cran: Rpdb

Read, Write, Visualize and Manipulate PDB Files
Papers that mentioned: 2

Very Likely Science (75)

pypi: exdir

Papers that mentioned: 2

Very Likely Science (65)

cran: quint

Qualitative Interaction Trees
Papers that mentioned: 2

Very Likely Science (75)

cran: r.jive

Perform JIVE Decomposition for Multi-Source Data
Papers that mentioned: 2

Very Likely Science (83)

pypi: chemical

Rust-style iterators for Python!
Papers that mentioned: 2

Very Likely Science (65)

pypi: runner.py

runner.py Run, Attach, Schedule, Repeat, Chain and React to commands.
Papers that mentioned: 2

Very Likely Science (65)

pypi: chi

A high-level framework for advanced deep learning with TensorFlow
Papers that mentioned: 2

Very Likely Science (65)

pypi: tag

Genome annotation data analysis and management implemented in pure Python
Papers that mentioned: 2

Very Likely Science (90)

pypi: mime

MIME Types
Papers that mentioned: 2

Very Likely Science (85)

pypi: chr

Python based URL shortening service
Papers that mentioned: 2

Likely Science (40)

cran: RcppRoll

Efficient Rolling / Windowed Operations
Papers that mentioned: 2

Very Likely Science (75)

pypi: cicero

Cicero - Serving presentation slides written in Markdown.
Papers that mentioned: 2

Very Likely Science (85)

pypi: MimicDB

Python implementation of MimicDB
Papers that mentioned: 2

Very Likely Science (65)

pypi: cilantro

A client implementation for Serrano 2.x
Papers that mentioned: 2

Very Likely Science (100)

pypi: thermo

Chemical properties component of Chemical Engineering Design Library (ChEDL)
Papers that mentioned: 2

Very Likely Science (100)

cran: reconstructKM

Reconstruct Individual-Level Data from Published KM Plots
Papers that mentioned: 2

Very Likely Science (75)

cran: phenomap

Projecting Satellite-Derived Phenology in Space
Papers that mentioned: 2

Very Likely Science (100)

cran: regions

Processing Regional Statistics
Papers that mentioned: 2

Very Likely Science (85)

cran: RRreg

Correlation and Regression Analyses for Randomized Response Data
Papers that mentioned: 2

Very Likely Science (95)

cran: repeated

Non-Normal Repeated Measurements Models
Papers that mentioned: 2

Very Likely Science (75)

cran: PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM
Papers that mentioned: 2

Very Likely Science (100)

pypi: Miniature

Multi backend image processing and thumbnailer
Papers that mentioned: 2

Very Likely Science (65)

cran: phyloseqGraphTest

Graph-Based Permutation Tests for Microbiome Data
Papers that mentioned: 2

Very Likely Science (75)

pypi: minid

FAIR Research Minimum Viable Identifier
Papers that mentioned: 2

Very Likely Science (90)

pypi: fix

Simple test fixtures.
Papers that mentioned: 2

Very Likely Science (65)

pypi: FlyBrainLab

FlyBrainLab User-side Backend
Papers that mentioned: 2

Very Likely Science (65)

pypi: JCC

a C++ code generator for calling Java from C++/Python
Papers that mentioned: 2

Very Likely Science (65)

cran: RSDA

R to Symbolic Data Analysis
Papers that mentioned: 2

Very Likely Science (85)

pypi: civic2clinvar

extraction of CIViC variants into the clinvar submission format
Papers that mentioned: 2

Very Likely Science (100)

pypi: s3db

A simple document db using s3 buckets
Papers that mentioned: 2

Very Likely Science (65)

pypi: optics

Transfer matrix simulation of 1D optical multilayers
Papers that mentioned: 2

Very Likely Science (75)

pypi: clara

Conversational chit-chat utility agent
Papers that mentioned: 2

Unlikely Science (15)

cran: xmeta

A Toolbox for Multivariate Meta-Analysis
Papers that mentioned: 2

Very Likely Science (85)

pypi: Mirador

client for the Mirador image moderation API. (mirador.im)
Papers that mentioned: 2

Very Likely Science (65)

pypi: safari

Python utilities for Safari.
Papers that mentioned: 2

Very Likely Science (65)

pypi: Gates

Minimal, fast and intuitive REST HTTP services in python
Papers that mentioned: 2

Possibly Science (35)

pypi: SAGA-optimize

Optimization method for solving boundary-value inverse problem based on a combined simulated annealing and genetic algorithm
Papers that mentioned: 2

Very Likely Science (100)

pypi: cleaver

Bloody simple A/B testing for Python WSGI applications
Papers that mentioned: 2

Very Likely Science (80)

pypi: clhs

Conditioned Latin Hypercube Sampling in Python
Papers that mentioned: 2

Very Likely Science (100)

pypi: readFile

Is used to read the sketch.txt file
Papers that mentioned: 2

Very Likely Science (65)

pypi: miso

Python scripts for training CNNs for particle classification
Papers that mentioned: 2

Very Likely Science (100)

pypi: clinker

Gene cluster comparison figure generator
Papers that mentioned: 2

Very Likely Science (100)

cran: abcdeFBA

Papers that mentioned: 2

Unlikely Science (0)

cran: abctools

Tools for ABC Analyses
Papers that mentioned: 2

Very Likely Science (97)

bioconductor: eudysbiome

Cartesian plot and contingency test on 16S Microbial data
Papers that mentioned: 2

Very Likely Science (83)

pypi: genysis

generative design
Papers that mentioned: 2

Very Likely Science (65)

cran: acebayes

Optimal Bayesian Experimental Design using the ACE Algorithm
Papers that mentioned: 2

Very Likely Science (93)

bioconductor: DepecheR

Determination of essential phenotypic elements of clusters in high-dimensional entities
Papers that mentioned: 2

Very Likely Science (90)

cran: addreg

Additive Regression for Discrete Data
Papers that mentioned: 2

Very Likely Science (97)

cran: rsvd

Randomized Singular Value Decomposition
Papers that mentioned: 2

Very Likely Science (100)

cran: admix

Package Admix for Admixture (aka Contamination) Models
Papers that mentioned: 2

Very Likely Science (100)

pypi: sampler

Sample data generator for Python
Papers that mentioned: 2

Very Likely Science (65)

cran: rredlist

'IUCN' Red List Client
Papers that mentioned: 2

Very Likely Science (75)

pypi: missingpy

Missing Data Imputation for Python
Papers that mentioned: 2

Very Likely Science (65)

cran: algo

Implement an Address Search Auto Completion Menu on 'Shiny' Text Inputs Using the 'Algolia Places' 'Javascript' Library
Papers that mentioned: 2

Very Likely Science (75)

pypi: mitos

MITOS: de novo annotation of metazoan mitochondrial genomes
Papers that mentioned: 2

Very Likely Science (80)

pypi: Clockwork

Python wrapper for the clockwork SMS Api
Papers that mentioned: 2

Very Likely Science (65)

cran: archive

Multi-Format Archive and Compression Support
Papers that mentioned: 2

Very Likely Science (75)

cran: FcircSEC

Full Length Circular RNA Sequence Extraction and Classification
Papers that mentioned: 2

Very Likely Science (75)

cran: anomalize

Tidy Anomaly Detection
Papers that mentioned: 2

Very Likely Science (100)

cran: aTSA

Alternative Time Series Analysis
Papers that mentioned: 2

Very Likely Science (93)

pypi: mittens

Fast GloVe with optional retrofitting.
Papers that mentioned: 2

Very Likely Science (100)

cran: archetypes

Archetypal Analysis
Papers that mentioned: 2

Very Likely Science (85)

cran: argparser

Command-Line Argument Parser
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: mpra

Analyze massively parallel reporter assays
Papers that mentioned: 2

Very Likely Science (100)

cran: rvTDT

population control weighted rare-variants TDT
Papers that mentioned: 2

Very Likely Science (75)

pypi: mixture

Mixin classes for great objects !
Papers that mentioned: 2

Very Likely Science (60)

pypi: clr

🌈 Terminal string styling
Papers that mentioned: 2

Very Likely Science (65)

cran: ascii

Export R Objects to Several Markup Languages
Papers that mentioned: 2

Very Likely Science (75)

pypi: mkdir

mkdir
Papers that mentioned: 2

Very Likely Science (65)

pypi: pair

a ladder pairing/matching library
Papers that mentioned: 2

Very Likely Science (65)

cran: asdreader

Reading ASD Binary Files in R
Papers that mentioned: 2

Very Likely Science (80)

bioconductor: msmsEDA

Exploratory Data Analysis of LC-MS/MS data by spectral counts
Papers that mentioned: 2

Very Likely Science (100)

cran: ELYP

Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
Papers that mentioned: 2

Very Likely Science (93)

bioconductor: msPurity

Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Papers that mentioned: 2

Very Likely Science (100)

cran: BalancedSampling

Balanced and Spatially Balanced Sampling
Papers that mentioned: 2

Very Likely Science (75)

bioconductor: multicrispr

Multi-locus multi-purpose Crispr/Cas design
Papers that mentioned: 2

Very Likely Science (100)

cran: saccades

Detection of Fixations in Eye-Tracking Data
Papers that mentioned: 2

Likely Science (50)