Packages with Software Mentions in Scientific Papers

bioconductor: ADImpute

Adaptive Dropout Imputer (ADImpute)
Papers that mentioned: 1

Very Likely Science (100)

pypi: ClusterIt

Configurable clustering feature proxy
Papers that mentioned: 1

Very Likely Science (65)

pypi: clusterX

CELL (aka clusterX) is a python package for building Cluster Expansion models of simple and complex alloys and performing thermodynamical analyses of materials.
Papers that mentioned: 1

Very Likely Science (65)

pypi: enzo

A neural network library designed from scratch.
Papers that mentioned: 1

Very Likely Science (90)

pypi: cmod

Cmake package retrieval
Papers that mentioned: 1

Very Likely Science (65)

cran: IntegratedMRF

Integrated Prediction using Uni-Variate and Multivariate Random Forests
Papers that mentioned: 1

Very Likely Science (85)

cran: pleio

Pleiotropy Test for Multiple Traits on a Genetic Marker
Papers that mentioned: 1

Very Likely Science (93)

pypi: fable

Fable: Tex Editor
Papers that mentioned: 1

Very Likely Science (65)

pypi: cmml

机器学习
Papers that mentioned: 1

Very Likely Science (65)

cran: PLIS

Multiplicity Control using Pooled LIS Statistic
Papers that mentioned: 1

Very Likely Science (75)

cran: pln

Polytomous Logit-Normit (Graded Logistic) Model Estimation
Papers that mentioned: 1

Very Likely Science (75)

cran: DiffXTables

Pattern Analysis Across Contingency Tables
Papers that mentioned: 1

Very Likely Science (93)

cran: Modalclust

Hierarchical Modal Clustering
Papers that mentioned: 1

Very Likely Science (83)

pypi: pecan

A WSGI object-dispatching web framework, designed to be lean and fast, with few dependencies.
Papers that mentioned: 1

Very Likely Science (65)

pypi: fns

Reusable functions for use in ML projects
Papers that mentioned: 1

Very Likely Science (65)

pypi: CodeAnalyzer

A static and runtime code analysis tool
Papers that mentioned: 1

Very Likely Science (75)

pypi: CodeJam

Convenience functions for Google Code Jam
Papers that mentioned: 1

Very Likely Science (65)

pypi: eo

Machine Readable Corpus of US Executive Orders
Papers that mentioned: 1

Very Likely Science (65)

pypi: collect

Python library for collecting data at collect.io
Papers that mentioned: 1

Very Likely Science (80)

pypi: pnet

Fast zero-copy packet creating and parsing module
Papers that mentioned: 1

Very Likely Science (65)

pypi: measures

Library for posting metrics to a server
Papers that mentioned: 1

Very Likely Science (65)

pypi: otc

Oblivious transfer (OT) communications protocol message/response functionality implementations based on Curve25519 and the Ristretto group.
Papers that mentioned: 1

Very Likely Science (65)

cran: paramlink

Parametric Linkage and Other Pedigree Analysis in R
Papers that mentioned: 1

Very Likely Science (85)

cran: desiR

Desirability Functions for Ranking, Selecting, and Integrating Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: colortools

A short description for your project.
Papers that mentioned: 1

Very Likely Science (65)

cran: MM4LMM

Inference of Linear Mixed Models Through MM Algorithm
Papers that mentioned: 1

Very Likely Science (60)

pypi: register

registry for functions and classes
Papers that mentioned: 1

Very Likely Science (65)

cran: DendSer

Dendrogram Seriation: Ordering for Visualisation
Papers that mentioned: 1

Very Likely Science (85)

cran: Yamm

Multivariate Methods Based on Projections and Related Concepts
Papers that mentioned: 1

Very Likely Science (93)

pypi: bcbio-gff

Read and write Generic Feature Format (GFF) with Biopython integration.
Papers that mentioned: 1

Very Likely Science (100)

pypi: regius

regius - Python Handsome Web Framework
Papers that mentioned: 1

Very Likely Science (65)

cran: mlegp

Maximum Likelihood Estimates of Gaussian Processes
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: DrugVsDisease

Comparison of disease and drug profiles using Gene set Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: MLEcens

Computation of the MLE for Bivariate Interval Censored Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: fabric

High level SSH command execution
Papers that mentioned: 1

Very Likely Science (100)

cran: MLCM

Maximum Likelihood Conjoint Measurement
Papers that mentioned: 1

Very Likely Science (75)

cran: mkde

2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Papers that mentioned: 1

Very Likely Science (83)

cran: MixTwice

Large-Scale Hypothesis Testing by Variance Mixing
Papers that mentioned: 1

Very Likely Science (93)

pypi: fmrb

Papers that mentioned: 1

Very Likely Science (65)

cran: mixRasch

Mixture Rasch Models with JMLE
Papers that mentioned: 1

Very Likely Science (75)

cran: dcminfo

Information Matrix for Diagnostic Classification Models
Papers that mentioned: 1

Very Likely Science (75)

cran: ggpolypath

Polygons with Holes for the Grammar of Graphics
Papers that mentioned: 1

Very Likely Science (85)

cran: MixAll

Clustering and Classification using Model-Based Mixture Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: echarts

A echarts Python project
Papers that mentioned: 1

Very Likely Science (65)

pypi: Alp

Alp time tools
Papers that mentioned: 1

Very Likely Science (65)

cran: mixedCCA

Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: mech

Tool for command line virtual machines
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: epihet

Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
Papers that mentioned: 1

Very Likely Science (100)

cran: miRtest

Combined miRNA- And mRNA-Testing
Papers that mentioned: 1

Very Likely Science (75)

pypi: allostery

This package deals with analysis of MD trajectories in order to understantd allostery.
Papers that mentioned: 1

Very Likely Science (75)

pypi: bioconda2biocontainer

Tools to synchronize bioconda packages and versions with Biocontainer images
Papers that mentioned: 1

Very Likely Science (70)

bioconductor: exomePeak2

Peak Calling and differential analysis for MeRIP-Seq
Papers that mentioned: 1

Very Likely Science (100)

pypi: BioDendro

a package to cluster metabolomics data and plot dendrograms
Papers that mentioned: 1

Very Likely Science (100)

pypi: BioExp

Deep Learning model analysis toolbox
Papers that mentioned: 1

Very Likely Science (75)

cran: DACF

Data Analysis with Ceiling and/or Floor Data
Papers that mentioned: 1

Very Likely Science (93)

cran: microcontax

The ConTax Data Package
Papers that mentioned: 1

Very Likely Science (75)

pypi: pdf2text

A PDFMiner wrapper to ease the text extraction from pdf files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: autofeat

Automatic Feature Engineering and Selection Linear Prediction Model
Papers that mentioned: 1

Very Likely Science (65)

cran: TSHRC

Two Stage Hazard Rate Comparison
Papers that mentioned: 1

Likely Science (58)

pypi: biogeme

Estimation and application of discrete choice models
Papers that mentioned: 1

Very Likely Science (80)

cran: tsibble

Tidy Temporal Data Frames and Tools
Papers that mentioned: 1

Very Likely Science (75)

pypi: aladin

Analysis of large-dimensional data in neuroscience
Papers that mentioned: 1

Very Likely Science (75)

pypi: rei

Python port of `re2` C++ library.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pathlib

Object-oriented filesystem paths
Papers that mentioned: 1

Very Likely Science (65)

pypi: BayesASE

Bayesian analysis of allele specific expression
Papers that mentioned: 1

Very Likely Science (100)

cran: Ghat

Quantifying Evolution and Selection on Complex Traits
Papers that mentioned: 1

Very Likely Science (75)

cran: cubature

Adaptive Multivariate Integration over Hypercubes
Papers that mentioned: 1

Very Likely Science (100)

pypi: alea

Papers that mentioned: 1

Very Likely Science (65)

pypi: AJAS

Lightweight REST Sever framework, based on bottle
Papers that mentioned: 1

Very Likely Science (65)

pypi: Aion

Papers that mentioned: 1

Very Likely Science (65)

pypi: aikido

Python library TBA
Papers that mentioned: 1

Very Likely Science (65)

pypi: enki

A Python library to analyze PYBOSSA project's results
Papers that mentioned: 1

Very Likely Science (95)

pypi: bayes

Bayes classification implementation
Papers that mentioned: 1

Very Likely Science (65)

pypi: BioMetaDB

Use biological data to generate SQL database schema
Papers that mentioned: 1

Very Likely Science (85)

pypi: aenet

Papers that mentioned: 1

Very Likely Science (65)

pypi: baton

Python wrapper for baton.
Papers that mentioned: 1

Very Likely Science (100)

pypi: adk

A ADK-dev Kit
Papers that mentioned: 1

Very Likely Science (65)

pypi: biopandas

Machine Learning Library Extensions
Papers that mentioned: 1

Very Likely Science (100)

cran: credsubs

Credible Subsets
Papers that mentioned: 1

Very Likely Science (83)

cran: MGRASTer

API Client for the MG-RAST Server of the US DOE KBase
Papers that mentioned: 1

Very Likely Science (75)

cran: glmmsr

Fit a Generalized Linear Mixed Model
Papers that mentioned: 1

Very Likely Science (75)

pypi: biopipe

Pipeable commandline utilities for simple bioinformatics research.
Papers that mentioned: 1

Very Likely Science (95)

cran: CpGFilter

CpG Filtering Method Based on Intra-Class Correlation Coefficients
Papers that mentioned: 1

Very Likely Science (93)

pypi: pmeta

Python for Meta Analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: flyr

Flyr is a library for extracting thermal data from FLIR images written fully in Python, without depending on ExifTool.
Papers that mentioned: 1

Very Likely Science (80)

pypi: BatchTINTV3

BatchTINTV3 - GUI created to more efficiently sort Axona/Tint data.
Papers that mentioned: 1

Very Likely Science (85)

cran: COUSCOus

A Residue-Residue Contact Detecting Method
Papers that mentioned: 1

Very Likely Science (75)

cran: countcolors

Locates and Counts Pixels Within Color Range(s) in Images
Papers that mentioned: 1

Very Likely Science (75)

pypi: stroke

Utilities for & with strings.
Papers that mentioned: 1

Very Likely Science (65)

cran: corTest

Robust Tests for Equal Correlation
Papers that mentioned: 1

Very Likely Science (93)

pypi: ecalc

a simple Python-based calculator for network engineers/researchers
Papers that mentioned: 1

Very Likely Science (75)

cran: NitrogenUptake2016

Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata
Papers that mentioned: 1

Very Likely Science (85)

pypi: advbox

Python toolbox to create adversarial examples that fool neural networks
Papers that mentioned: 1

Very Likely Science (90)

cran: CorrMixed

Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: Fortuna

High Performance Random Value Toolkit
Papers that mentioned: 1

Possibly Science (30)

pypi: 3t

Papers that mentioned: 1

Very Likely Science (65)

cran: nimbleEcology

Distributions for Ecological Models in 'nimble'
Papers that mentioned: 1

Very Likely Science (100)

pypi: mediate

Middleware for every occasion
Papers that mentioned: 1

Very Likely Science (65)

pypi: mcx

Express & compile probabilistic programs for performant inference on CPU & GPU. Powered by JAX.
Papers that mentioned: 1

Very Likely Science (65)

cran: nichevol

Tools for Ecological Niche Evolution Assessment Considering Uncertainty
Papers that mentioned: 1

Very Likely Science (95)