Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

bioconductor: ribosomeProfilingQC
Ribosome Profiling Quality Control
Papers that mentioned: 1
bioconductor: Rhtslib
HTSlib high-throughput sequencing library as an R package
Papers that mentioned: 1
bioconductor: rhdf5client
Access HDF5 content from HDF Scalable Data Service
Papers that mentioned: 1
bioconductor: rgsepd
Gene Set Enrichment / Projection Displays
Papers that mentioned: 1
bioconductor: RGSEA
Random Gene Set Enrichment Analysis
Papers that mentioned: 1
pypi: 1024

Papers that mentioned: 1
bioconductor: restfulSE
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
Papers that mentioned: 1
pypi: 1st

Papers that mentioned: 1
cran: metapower
Power Analysis for Meta-Analysis
Papers that mentioned: 1
bioconductor: RepViz
Replicate oriented Visualization of a genomic region
Papers that mentioned: 1
cran: MetaSubtract
Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results
Papers that mentioned: 1
cran: metatest
Fit and Test Metaregression Models
Papers that mentioned: 1
bioconductor: RegEnrich
Gene regulator enrichment analysis
Papers that mentioned: 1
bioconductor: RefPlus
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Papers that mentioned: 1
cran: MetGen
Stochastic Weather Generator
Papers that mentioned: 1
bioconductor: REDseq
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Papers that mentioned: 1
cran: MethodCompare
Bias and Precision Plots
Papers that mentioned: 1
bioconductor: receptLoss
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors
Papers that mentioned: 1
bioconductor: REBET
The subREgion-based BurdEn Test (REBET)
Papers that mentioned: 1
bioconductor: randPack
Randomization routines for Clinical Trials
Papers that mentioned: 1
cran: MfUSampler
Multivariate-from-Univariate (MfU) MCMC Sampler
Papers that mentioned: 1
bioconductor: RadioGx
Analysis of Large-Scale Radio-Genomic Data
Papers that mentioned: 1
bioconductor: QuaternaryProd
Computes the Quaternary Dot Product Scoring Statistic for Signed and Unsigned Causal Graphs
Papers that mentioned: 1
cran: geno2proteo
Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci
Papers that mentioned: 1
pypi: 256

Papers that mentioned: 1
pypi: 2to3
Adds the 2to3 command directly to entry_points.
Papers that mentioned: 1
bioconductor: QuartPAC
Identification of mutational clusters in protein quaternary structures.
Papers that mentioned: 1
pypi: 3t

Papers that mentioned: 1
pypi: 3to2
Refactors valid 3.x syntax into valid 2.x syntax, if a syntactical conversion is possible
Papers that mentioned: 1
bioconductor: pvac
PCA-based gene filtering for Affymetrix arrays
Papers that mentioned: 1
bioconductor: proteinProfiles
Protein Profiling
Papers that mentioned: 1
bioconductor: profileScoreDist
Profile score distributions
Papers that mentioned: 1
bioconductor: proFIA
Preprocessing of FIA-HRMS data
Papers that mentioned: 1
bioconductor: proBAMr
Generating SAM file for PSMs in shotgun proteomics data
Papers that mentioned: 1
bioconductor: prebs
Probe region expression estimation for RNA-seq data for improved microarray comparability
Papers that mentioned: 1
pypi: Aadhar
Python Library to validate and generate aadhar numbers
Papers that mentioned: 1
pypi: abacus
Helper Library for Tornado Web Framework
Papers that mentioned: 1
bioconductor: powerTCR
Model-Based Comparative Analysis of the TCR Repertoire
Papers that mentioned: 1
pypi: Abbas
A simple printer of lists
Papers that mentioned: 1
pypi: abf
Abstract Binary Format manipulation : elf pe mach-o
Papers that mentioned: 1
pypi: abi
DLL ABI loader
Papers that mentioned: 1
pypi: absolute
A simple function which computes the absolute value of a number
Papers that mentioned: 1
bioconductor: podkat
Position-Dependent Kernel Association Test
Papers that mentioned: 1
cran: pBrackets
Plot Brackets
Papers that mentioned: 1
bioconductor: PoDCall
Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Papers that mentioned: 1
bioconductor: plethy
R framework for exploration and analysis of respirometry data
Papers that mentioned: 1
bioconductor: planet
Placental DNA methylation analysis tools
Papers that mentioned: 1
pypi: acf
Lightweight recommender engine
Papers that mentioned: 1
pypi: acora
Fast multi-keyword search engine for text strings
Papers that mentioned: 1
pypi: acquire
A tool to quickly gather forensic artifacts from disk images or a live system into a lightweight container
Papers that mentioned: 1
bioconductor: pipeComp
pipeComp pipeline benchmarking framework
Papers that mentioned: 1
cran: PBRF
The Probability of Being in Response Function and Its Variance Estimates
Papers that mentioned: 1
pypi: acs
Azure Container Service command line tools
Papers that mentioned: 1
pypi: Busca
Full featured Gnome file searching application
Papers that mentioned: 1
bioconductor: pcxn
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Papers that mentioned: 1
cran: lmDiallel
Linear Fixed/Mixed Effects Models for Diallel Crosses
Papers that mentioned: 1
cran: LLSR
Data Analysis of Liquid-Liquid Systems using R
Papers that mentioned: 1
cran: MGRASTer
API Client for the MG-RAST Server of the US DOE KBase
Papers that mentioned: 1
cran: LKT
Logistic Knowledge Tracing
Papers that mentioned: 1
cran: listdtr
List-Based Rules for Dynamic Treatment Regimes
Papers that mentioned: 1
cran: GenKern
Functions for generating and manipulating binned kernel density estimates
Papers that mentioned: 1
cran: list
Statistical Methods for the Item Count Technique and List Experiment
Papers that mentioned: 1
cran: mhsmm
Inference for Hidden Markov and Semi-Markov Models
Papers that mentioned: 1
cran: lipidomeR
Integrative Visualizations of the Lipidome
Papers that mentioned: 1
cran: LINselect
Selection of Linear Estimators
Papers that mentioned: 1
cran: linearModel
Linear Model Functions
Papers that mentioned: 1
pypi: adk
A ADK-dev Kit
Papers that mentioned: 1
cran: lilikoi
Metabolomics Personalized Pathway Analysis Tool
Papers that mentioned: 1
pypi: adm
Active Data Mapping, Pre-Alpha Release
Papers that mentioned: 1
cran: geneListPie
Profiling a gene list into GOslim or KEGG function pie
Papers that mentioned: 1
pypi: adr
This Python script is designed to help software development teams document their architecture decisions using Architecture Decision Records (ADRs).
Papers that mentioned: 1
pypi: ADTM
Adaptive Data Tabulation Markup
Papers that mentioned: 1
cran: lift
Compute the Top Decile Lift and Plot the Lift Curve
Papers that mentioned: 1
pypi: adw
appdirs wrapper library
Papers that mentioned: 1
pypi: aenet

Papers that mentioned: 1
cran: LifeTables
Two-Parameter HMD Model Life Table System
Papers that mentioned: 1
pypi: ag
AlgoLib Project
Papers that mentioned: 1
cran: pCalibrate
Bayesian Calibrations of p-Values
Papers that mentioned: 1
pypi: aggregation

Papers that mentioned: 1
pypi: Agree
Simple argument resolution.
Papers that mentioned: 1
pypi: aha
aha is a web application framework specialized for Google App Engine.
Papers that mentioned: 1
cran: gendata
Generate and Modify Synthetic Datasets
Papers that mentioned: 1
pypi: aikido
Python library TBA
Papers that mentioned: 1
pypi: Aion

Papers that mentioned: 1
pypi: AJAS
Lightweight REST Sever framework, based on bottle
Papers that mentioned: 1
pypi: alabama
A small and simple python orm to connect with postgresql database.
Papers that mentioned: 1
pypi: aladin
Analysis of large-dimensional data in neuroscience
Papers that mentioned: 1
cran: LeMaRns
Length-Based Multispecies Analysis by Numerical Simulation
Papers that mentioned: 1
pypi: Ale
Abstraction Layer for Ephemerides
Papers that mentioned: 1
pypi: alea
Papers that mentioned: 1
pypi: aleph
ALEPH is a bioinformatics tool for structure interpretation and generation of fragment-based library for Molecular Replacement.
Papers that mentioned: 1
pypi: alfpy
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).
Papers that mentioned: 1
cran: leafSTAR
Silhouette to Area Ratio of Tilted Surfaces
Papers that mentioned: 1
cran: GEEaSPU
Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
Papers that mentioned: 1
cran: microcontax
The ConTax Data Package
Papers that mentioned: 1
cran: MicroMacroMultilevel
Micro-Macro Multilevel Modeling
Papers that mentioned: 1
cran: ldamatch
Selection of Statistically Similar Research Groups
Papers that mentioned: 1
cran: MIDN
Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions
Papers that mentioned: 1
cran: MIICD
Multiple Imputation for Interval Censored Data
Papers that mentioned: 1
cran: lcc
Longitudinal Concordance Correlation
Papers that mentioned: 1