Packages with Software Mentions in Scientific Papers

pypi: EpiClass

Optimizing and predicting performance of DNA methylation biomarkers using sequence methylation density information.
Papers that mentioned: 1

Very Likely Science (100)

pypi: rgs

A small package to display and manipulate random geometry structures like pairings, meanders, triangulations and tilings.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ae

Python accoustic emission tools
Papers that mentioned: 1

Very Likely Science (67)

pypi: pySCATMECH

A Python interface to the SCATMECH library
Papers that mentioned: 1

Very Likely Science (80)

pypi: adr

This Python script is designed to help software development teams document their architecture decisions using Architecture Decision Records (ADRs).
Papers that mentioned: 1

Very Likely Science (65)

cran: unnest

Unnest Hierarchical Data Structures
Papers that mentioned: 1

Very Likely Science (75)

pypi: mine

Share application state across computers using Dropbox.
Papers that mentioned: 1

Very Likely Science (65)

cran: phenofit

Extract Remote Sensing Vegetation Phenology
Papers that mentioned: 1

Very Likely Science (100)

pypi: flimview

A software framework to handle, visualize and analyze FLIM data
Papers that mentioned: 1

Very Likely Science (100)

pypi: rhyme

fly.
Papers that mentioned: 1

Very Likely Science (65)

pypi: SimpactPurple

Agent-based HIV modeling tool.
Papers that mentioned: 1

Very Likely Science (75)

pypi: DeerNet

a library used for stacking based on scikit-learn
Papers that mentioned: 1

Very Likely Science (65)

pypi: x3d

Python package support for Extensible 3D (X3D) Graphics International Standard (IS)
Papers that mentioned: 1

Very Likely Science (90)

cran: LS2W

Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Papers that mentioned: 1

Very Likely Science (83)

pypi: Agree

Simple argument resolution.
Papers that mentioned: 1

Very Likely Science (65)

cran: capl

Compute and Visualize CAPL-2 Scores and Interpretations
Papers that mentioned: 1

Likely Science (50)

pypi: DeepXDE

A library for scientific machine learning
Papers that mentioned: 1

Very Likely Science (100)

pypi: RiboMiner

A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Papers that mentioned: 1

Very Likely Science (100)

pypi: flows

a Python automated workflow generator
Papers that mentioned: 1

Very Likely Science (65)

pypi: dbio

Simple module for database I/O operations.
Papers that mentioned: 1

Very Likely Science (65)

pypi: DeepGMAP

Learning and predicting gene regulatory sequences in genomes
Papers that mentioned: 1

Very Likely Science (80)

cran: bucky

Bucky's Archive for Data Analysis in the Social Sciences
Papers that mentioned: 1

Very Likely Science (100)

pypi: FlowKit

Flow Cytometry Toolkit
Papers that mentioned: 1

Very Likely Science (95)

pypi: Rider

Python Web Application Framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: amplify

Amplify SDK for Quantum Annealing and Ising Machines
Papers that mentioned: 1

Very Likely Science (80)

cran: longclust

Model-Based Clustering and Classification for Longitudinal Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: tsfel

Library for time series feature extraction
Papers that mentioned: 1

Very Likely Science (80)

pypi: albatradis

Comparitive transposon mutagenesis experiment analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: MonoInc

Monotonic Increasing
Papers that mentioned: 1

Very Likely Science (83)

pypi: gaia

manage computation of a network of dependent processes
Papers that mentioned: 1

Very Likely Science (85)

pypi: metabolisHMM

Constructing phylogenies and performing functional annotations with HMM markers
Papers that mentioned: 1

Very Likely Science (91)

cran: patchDVI

Package to Patch '.dvi' or '.synctex' Files
Papers that mentioned: 1

Very Likely Science (75)

pypi: DeepQ

A small lib to make reinforcement learning easyer
Papers that mentioned: 1

Very Likely Science (65)

pypi: metacells

Single-cell RNA Sequencing Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: gala

Galactic dynamics in Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: econ

An open set of economics related tools, data and services.
Papers that mentioned: 1

Very Likely Science (65)

cran: lmreg

Data and Functions Used in Linear Models and Regression with R: An Integrated Approach
Papers that mentioned: 1

Very Likely Science (85)

pypi: galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
Papers that mentioned: 1

Very Likely Science (100)

pypi: metal

Security App Installation & Configuration
Papers that mentioned: 1

Possibly Science (35)

pypi: ballet

Core functionality for lightweight, collaborative data science projects
Papers that mentioned: 1

Very Likely Science (100)

pypi: baidumap

api handle for baidu map
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: tkWidgets

R based tk widgets
Papers that mentioned: 1

Very Likely Science (83)

cran: bridgedist

An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: synlet

Hits Selection for Synthetic Lethal RNAi Screen Data
Papers that mentioned: 1

Very Likely Science (90)

cran: pct

Propensity to Cycle Tool
Papers that mentioned: 1

Very Likely Science (100)

cran: pdftables

Programmatic Conversion of PDF Tables
Papers that mentioned: 1

Very Likely Science (95)

cran: pdi

Phenotypic Index Measures for Oak Decline Severity
Papers that mentioned: 1

Very Likely Science (100)

pypi: arr

Astronomic Reference Resolver
Papers that mentioned: 1

Very Likely Science (65)

pypi: epicode

UNKNOWN
Papers that mentioned: 1

Very Likely Science (100)

cran: PepSAVIms

PepSAVI-MS Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: Gask

A git backed task management system
Papers that mentioned: 1

Likely Science (40)

pypi: ebus

ebus - Event bus
Papers that mentioned: 1

Very Likely Science (65)

cran: peRiodiCS

Functions for Generating Periodic Curves
Papers that mentioned: 1

Very Likely Science (75)

cran: ushr

Understanding Suppression of HIV
Papers that mentioned: 1

Very Likely Science (78)

cran: Infusion

Inference Using Simulation
Papers that mentioned: 1

Very Likely Science (85)

pypi: gbasis

Python library for analytical evaluation and integration of Gaussian-type basis functions and related quantities.
Papers that mentioned: 1

Very Likely Science (100)

pypi: deepchem

Deep learning models for drug discovery, quantum chemistry, and the life sciences.
Papers that mentioned: 1

Very Likely Science (90)

pypi: SSML

This is a description
Papers that mentioned: 1

Very Likely Science (65)

pypi: base-package

python package template.
Papers that mentioned: 1

Very Likely Science (65)

cran: regspec

Non-Parametric Bayesian Spectrum Estimation for Multirate Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: pyiomica

Omics Analysis Tool Suite
Papers that mentioned: 1

Very Likely Science (100)

pypi: Bcfg2

Bcfg2 Server
Papers that mentioned: 1

Very Likely Science (65)

pypi: rMETL

realignment-based Mobile Element insertion detection Tool for Long read
Papers that mentioned: 1

Very Likely Science (95)

pypi: libSpineML

Python bindings for the SpineML specifications
Papers that mentioned: 1

Very Likely Science (65)

cran: BOIN

Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1

Very Likely Science (85)

cran: VaRES

Computes Value at Risk and Expected Shortfall for over 100 Parametric Distributions
Papers that mentioned: 1

Very Likely Science (95)

pypi: rmm

Utilities for Dask and CUDA interactions
Papers that mentioned: 1

Very Likely Science (100)

pypi: Benchmarker

small but awesome utility for benchmarking
Papers that mentioned: 1

Likely Science (40)

bioconductor: slalom

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: tti

Trading Technical Indicators, python library. Where Traditional Technical Analysis and AI are met.
Papers that mentioned: 1

Very Likely Science (90)

pypi: biomass

A Python Framework for Modeling and Analysis of Signaling Systems
Papers that mentioned: 1

Very Likely Science (90)

pypi: gcluster

Clustering based on graph algorithms
Papers that mentioned: 1

Very Likely Science (100)

pypi: sk

Utilities for scikit-learn to quickly build and experiment with machine learning models.
Papers that mentioned: 1

Very Likely Science (90)

pypi: BulkSMS

BulkSMS.co.uk Python implementation.
Papers that mentioned: 1

Very Likely Science (65)

pypi: sla

Non-parametric LOSVD analysis for galaxy spectra
Papers that mentioned: 1

Very Likely Science (81)

cran: npbr

Nonparametric Boundary Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: NPCirc

Nonparametric Circular Methods
Papers that mentioned: 1

Very Likely Science (75)

cran: blaster

Native R Implementation of an Efficient BLAST-Like Algorithm
Papers that mentioned: 1

Very Likely Science (100)

pypi: alns

A flexible implementation of the adaptive large neighbourhood search (ALNS) algorithm.
Papers that mentioned: 1

Very Likely Science (100)

pypi: EvoDAG

Evolving Directed Acyclic Graph
Papers that mentioned: 1

Very Likely Science (100)

pypi: RNAlysis

RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.
Papers that mentioned: 1

Very Likely Science (90)

cran: nproc

Neyman-Pearson (NP) Classification Algorithms and NP Receiver Operating Characteristic (NP-ROC) Curves
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: SigCheck

Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Papers that mentioned: 1

Very Likely Science (90)

pypi: gdsCAD

A simple Python package for creating or reading GDSII layout files.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyir

Python Intermediate Representation
Papers that mentioned: 1

Very Likely Science (65)

pypi: backbone

Tools for development with Backbone
Papers that mentioned: 1

Very Likely Science (65)

cran: Numero

Statistical Framework to Define Subgroups in Complex Datasets
Papers that mentioned: 1

Very Likely Science (85)

cran: proteus

Multiform Seq2Seq Model for Time-Feature Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: RNFtools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SigFuge

SigFuge
Papers that mentioned: 1

Very Likely Science (90)

cran: PROTOLIDAR

Papers that mentioned: 1

Unlikely Science (0)

pypi: pubsub

Simple Python PubSub
Papers that mentioned: 1

Very Likely Science (65)

cran: BivRegBLS

Tolerance Interval and EIV Regression - Method Comparison Studies
Papers that mentioned: 1

Very Likely Science (85)

cran: oops

S3 Style Object Oriented Programming
Papers that mentioned: 1

Very Likely Science (83)

pypi: Bluebook

Pylot is a Flask extension that adds structure and map your views and templates together for rapid application development
Papers that mentioned: 1

Very Likely Science (65)

pypi: babylon

ML implementations in Python.
Papers that mentioned: 1

Very Likely Science (65)

cran: RMTstat

Distributions, Statistics and Tests Derived from Random Matrix Theory
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: scry

Small-Count Analysis Methods for High-Dimensional Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: roadrunner

testrunner for test-driven development
Papers that mentioned: 1

Very Likely Science (65)

The command line tool for boutiqueforge.com. It contains a web server embedded that can emulate the BoutiqueForge environment. This allows you to develop and test on your local machine before pushing any changes to online. More information at https://boutiqueforge.com/docs/article/getting_started
Papers that mentioned: 1

Very Likely Science (65)