Packages with Software Mentions in Scientific Papers

A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
Papers that mentioned: 1

Very Likely Science (100)

cran: nodbi

'NoSQL' Database Connector
Papers that mentioned: 1

Very Likely Science (75)

pypi: replace

multiple replace
Papers that mentioned: 1

Very Likely Science (65)

pypi: RF24Network

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: LineagePulse

Differential expression analysis and model fitting for single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

cran: NMOF

Numerical Methods and Optimization in Finance
Papers that mentioned: 1

Very Likely Science (85)

cran: imbalance

Preprocessing Algorithms for Imbalanced Datasets
Papers that mentioned: 1

Very Likely Science (87)

pypi: franklin

Retrieve scientific papers and manage associated citations.
Papers that mentioned: 1

Very Likely Science (95)

pypi: opx

OpenSwitch Development Tool
Papers that mentioned: 1

Very Likely Science (65)

cran: NitrogenUptake2016

Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata
Papers that mentioned: 1

Very Likely Science (85)

pypi: metamapper

metamapper
Papers that mentioned: 1

Very Likely Science (80)

cran: OxyBS

Processing of Oxy-Bisulfite Microarray Data
Papers that mentioned: 1

Very Likely Science (85)

cran: iFad

An integrative factor analysis model for drug-pathway association inference
Papers that mentioned: 1

Very Likely Science (85)

cran: mergeTrees

Aggregating Trees
Papers that mentioned: 1

Very Likely Science (75)

pypi: RepeatFS

File system providing reproducibility through provenance and automation
Papers that mentioned: 1

Very Likely Science (95)

cran: ICGE

Estimation of Number of Clusters and Identification of Atypical Units
Papers that mentioned: 1

Very Likely Science (75)

cran: packagefinder

Comfortable Search for R Packages on CRAN, Either Directly from the R Console or with an R Studio Add-in
Papers that mentioned: 1

Very Likely Science (75)

cran: ICAOD

Optimal Designs for Nonlinear Statistical Models by Imperialist Competitive Algorithm (ICA)
Papers that mentioned: 1

Very Likely Science (85)

cran: IC2

Inequality and Concentration Indices and Curves
Papers that mentioned: 1

Very Likely Science (75)

pypi: repeatfinder

A package for finding repeats in a DNA sequence
Papers that mentioned: 1

Very Likely Science (65)

cran: nlsem

Fitting Structural Equation Mixture Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: jaconv

Pure-Python Japanese character interconverter for Hiragana, Katakana, Hankaku, Zenkaku and more
Papers that mentioned: 1

Very Likely Science (65)

cran: hitandrun

"Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
Papers that mentioned: 1

Very Likely Science (77)

pypi: repcomp

A package for comparing trained embedding models.
Papers that mentioned: 1

Very Likely Science (65)

cran: HistogramTools

Utility Functions for R Histograms
Papers that mentioned: 1

Likely Science (50)

pypi: TestFile

Hello-Test
Papers that mentioned: 1

Very Likely Science (65)

cran: TSPred

Functions for Benchmarking Time Series Prediction
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: rqt

rqt: utilities for gene-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: EmpiricalCalibration

Routines for Performing Empirical Calibration of Observational Study Estimates
Papers that mentioned: 1

Very Likely Science (100)

cran: elec

Collection of Functions for Statistical Election Audits
Papers that mentioned: 1

Very Likely Science (93)

cran: eirm

Explanatory Item Response Modeling for Dichotomous and Polytomous Items
Papers that mentioned: 1

Very Likely Science (100)

cran: strvalidator

Process Control and Validation of Forensic STR Kits
Papers that mentioned: 1

Very Likely Science (75)

cran: eigenmodel

Semiparametric Factor and Regression Models for Symmetric Relational Data
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: sights

Statistics and dIagnostic Graphs for HTS
Papers that mentioned: 1

Very Likely Science (89)

bioconductor: signatureSearch

Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: EHRtemporalVariability

Delineating Temporal Dataset Shifts in Electronic Health Records
Papers that mentioned: 1

Very Likely Science (95)

cran: SubpathwayLNCE

Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory
Papers that mentioned: 1

Very Likely Science (85)

pypi: glmtools

GLMtools
Papers that mentioned: 1

Very Likely Science (80)

bioconductor: SigsPack

Mutational Signature Estimation for Single Samples
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BiocStyle

Standard styles for vignettes and other Bioconductor documents
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SimBindProfiles

Similar Binding Profiles
Papers that mentioned: 1

Very Likely Science (98)

pypi: configparser

Updated configparser from stdlib for earlier Pythons.
Papers that mentioned: 1

Very Likely Science (85)

pypi: exoskeleton

A library to create a bot / spider / crawler.
Papers that mentioned: 1

Very Likely Science (80)

cran: colocalization

Normalized Spatial Intensity Correlation
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: ddPCRclust

Clustering algorithm for ddPCR data
Papers that mentioned: 1

Very Likely Science (100)

pypi: CoAPthon3

CoAPthon is a python library to the CoAP protocol.
Papers that mentioned: 1

Very Likely Science (65)

cran: eGST

Leveraging eQTLs to Identify Individual-Level Tissue of Interest for a Complex Trait
Papers that mentioned: 1

Very Likely Science (81)

bioconductor: similaRpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles
Papers that mentioned: 1

Very Likely Science (100)

pypi: comparator

Utility for comparing results between data sources
Papers that mentioned: 1

Likely Science (40)

pypi: Supycap

A python library for electrochemical analysis of supercapacitors
Papers that mentioned: 1

Very Likely Science (100)

cran: fastGHQuad

Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature
Papers that mentioned: 1

Very Likely Science (79)

cran: fastglm

Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen'
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rpx

R Interface to the ProteomeXchange Repository
Papers that mentioned: 1

Very Likely Science (100)

pypi: moneta

Emulator for different kinds (Debian/Yum/Pypi/Maven/…) of package repositories on the same server.
Papers that mentioned: 1

Very Likely Science (65)

pypi: moses

TLS encrypted socks5 proxy
Papers that mentioned: 1

Very Likely Science (65)

cran: buildr

Organize & Run Build Scripts Comfortably
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: simplifyEnrichment

Simplify Functional Enrichment Results
Papers that mentioned: 1

Very Likely Science (100)

pypi: loop

this is the simple loop function
Papers that mentioned: 1

Very Likely Science (65)

cran: CalibratR

Mapping ML Scores to Calibrated Predictions
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: rols

An R interface to the Ontology Lookup Service
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: bioassayR

Cross-target analysis of small molecule bioactivity
Papers that mentioned: 1

Very Likely Science (100)

pypi: jh

Papers that mentioned: 1

Very Likely Science (65)

pypi: JaqalPaq-extras

Python tools for Jaqal (extras)
Papers that mentioned: 1

Very Likely Science (80)

cran: fat2Lpoly

Two-Locus Family-Based Association Test with Polytomous Outcome
Papers that mentioned: 1

Very Likely Science (75)

cran: fbati

Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
Papers that mentioned: 1

Very Likely Science (75)

cran: EFAtools

Fast and Flexible Implementations of Exploratory Factor Analysis Tools
Papers that mentioned: 1

Very Likely Science (100)

pypi: conformer

The convolutional module from the Conformer paper
Papers that mentioned: 1

Very Likely Science (86)

pypi: momepy

Urban Morphology Measuring Toolkit
Papers that mentioned: 1

Very Likely Science (100)

pypi: MosT

auto test with interface
Papers that mentioned: 1

Very Likely Science (65)

cran: eesim

Simulate and Evaluate Time Series for Environmental Epidemiology
Papers that mentioned: 1

Very Likely Science (100)

cran: EdSurvey

Analysis of NCES Education Survey and Assessment Data
Papers that mentioned: 1

Very Likely Science (85)

cran: fixest

Fast Fixed-Effects Estimations
Papers that mentioned: 1

Very Likely Science (75)

pypi: Congo

Portfolio is a Flask based framework that adds structure and map your views and templates together for rapid application development
Papers that mentioned: 1

Very Likely Science (65)