Packages with Software Mentions in Scientific Papers

cran: PeakSegDP

Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
Papers that mentioned: 1

Very Likely Science (85)

pypi: diffpy.mpdf

Tools for magnetic PDF analysis.
Papers that mentioned: 1

Very Likely Science (90)

pypi: EMBL2checklists

Converts EMBL- or GenBank-formatted flatfiles to submission checklists (i.e., tab-separated spreadsheets) for submission to ENA via the interactive Webin submission system
Papers that mentioned: 1

Very Likely Science (86)

pypi: envs

Easy access of environment variables from Python with support for strings, booleans, list, tuples, and dicts.
Papers that mentioned: 1

Very Likely Science (65)

pypi: eo-learn

Earth observation processing framework for machine learning in Python
Papers that mentioned: 1

Very Likely Science (96)

pypi: eom

Experimental OpenStack WSGI Middleware
Papers that mentioned: 1

Very Likely Science (75)

pypi: diffuse

Python Diffuse
Papers that mentioned: 1

Likely Science (40)

pypi: gwpca

An example girder worker extension
Papers that mentioned: 1

Very Likely Science (65)

pypi: diffxpy

Fast and scalable differential expression analysis on single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (75)

pypi: Erik

Erik Misc
Papers that mentioned: 1

Very Likely Science (65)

cran: pyMTurkR

A Client for the 'MTurk' Requester API
Papers that mentioned: 1

Very Likely Science (75)

cran: PBRF

The Probability of Being in Response Function and Its Variance Estimates
Papers that mentioned: 1

Very Likely Science (85)

cran: ProfileLikelihood

Profile Likelihood for a Parameter in Commonly Used Statistical Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: esig

This package provides "rough path" tools for analysing vector time series.
Papers that mentioned: 1

Very Likely Science (80)

pypi: digger

Papers that mentioned: 1

Very Likely Science (65)

pypi: gxt

guess guess guess
Papers that mentioned: 1

Very Likely Science (65)

cran: PASWR

Probability and Statistics with R
Papers that mentioned: 1

Very Likely Science (93)

pypi: URF

Unsupervised Random Forest (Random Forest Clustering)
Papers that mentioned: 1

Very Likely Science (80)

cran: PASSED

Calculate Power and Sample Size for Two Sample Mean Tests
Papers that mentioned: 1

Very Likely Science (83)

cran: partitionMetric

Compute a distance metric between two partitions of a set
Papers that mentioned: 1

Very Likely Science (75)

cran: binGroup2

Identification and Estimation using Group Testing
Papers that mentioned: 1

Very Likely Science (88)

cran: propOverlap

Feature (gene) selection based on the Proportional Overlapping Scores
Papers that mentioned: 1

Very Likely Science (83)

pypi: DigiPathAI

Deep Learning toolbox for WSI (digital histopatology) analysis
Papers that mentioned: 1

Very Likely Science (81)

cran: Partiallyoverlapping

Partially Overlapping Samples Tests
Papers that mentioned: 1

Very Likely Science (83)

pypi: sdata

a structured data format
Papers that mentioned: 1

Very Likely Science (75)

cran: proton

The Proton Game
Papers that mentioned: 1

Likely Science (50)

pypi: dim

Docker Image Monitor
Papers that mentioned: 1

Very Likely Science (65)

pypi: Haiku

Haiku API Bindings
Papers that mentioned: 1

Very Likely Science (65)

pypi: dblp

Downloads and formats search results from dblp
Papers that mentioned: 1

Very Likely Science (85)

cran: ptycho

Bayesian Variable Selection with Hierarchical Priors
Papers that mentioned: 1

Very Likely Science (93)

pypi: multianalyzer

Rebinning of powder diffraction data taken with multiple analyzer crystals and a large area detector
Papers that mentioned: 1

Very Likely Science (90)

pypi: dimensions

Python lib to read width and height of image files
Papers that mentioned: 1

Very Likely Science (65)

cran: bmass

Bayesian Multivariate Analysis of Summary Statistics
Papers that mentioned: 1

Very Likely Science (100)

pypi: gsalib

Python version of R gsalib to read GATK Report tables into pandas DataFrames
Papers that mentioned: 1

Very Likely Science (75)

cran: optiscale

Optimal Scaling
Papers that mentioned: 1

Very Likely Science (75)

cran: optional

Optional Types and Pattern Matching
Papers that mentioned: 1

Very Likely Science (75)

pypi: hand

Feed generator for screen scrapers
Papers that mentioned: 1

Very Likely Science (85)

pypi: empath

A tool for text analysis
Papers that mentioned: 1

Very Likely Science (90)

pypi: delphi

A framework for assembling probabilistic models from text.
Papers that mentioned: 1

Very Likely Science (100)

pypi: blow

Small script to dos evil hackers.
Papers that mentioned: 1

Very Likely Science (65)

pypi: deform

Form library with advanced features like nested forms
Papers that mentioned: 1

Very Likely Science (65)

pypi: DiPAS

DiPAS is a framework for differentiable simulations of particle accelerators.
Papers that mentioned: 1

Very Likely Science (65)

pypi: happy

Quickly set up and tear down Heroku apps!
Papers that mentioned: 1

Very Likely Science (65)

pypi: sdb

A socket-based remote debugger for Python
Papers that mentioned: 1

Very Likely Science (65)

cran: R.SamBada

Processing Pipeline for 'SamBada' from Pre- To Post-Processing
Papers that mentioned: 1

Very Likely Science (75)

cran: r2d2

Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution
Papers that mentioned: 1

Very Likely Science (75)

pypi: hapROH

Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel
Papers that mentioned: 1

Very Likely Science (100)

pypi: util.py

Papers that mentioned: 1

Very Likely Science (65)

pypi: extra

Papers that mentioned: 1

Very Likely Science (65)

pypi: grr

A command-line utility to work with Gerrit
Papers that mentioned: 1

Very Likely Science (60)

pypi: dirichlet

Calculates Dirichlet test and plots 2-simplex Dirichlets
Papers that mentioned: 1

Very Likely Science (80)

pypi: mut

Papers that mentioned: 1

Very Likely Science (65)

pypi: defaulter

A library for when the behavior of default args just isn't cutting it
Papers that mentioned: 1

Very Likely Science (65)

cran: rasterImage

An Improved Wrapper of image()
Papers that mentioned: 1

Very Likely Science (75)

pypi: groupyr

groupyr: Sparse Groups Lasso in Python
Papers that mentioned: 1

Very Likely Science (90)

cran: rbacon

Age-Depth Modelling using Bayesian Statistics
Papers that mentioned: 1

Very Likely Science (93)

cran: RcmdrPlugin.GWRM

R Commander Plug-in for Fitting Generalized Waring Regression Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: DEERPREdict

A package for DEER and PRE predictions based on molecular dynamics ensembles. Can be installed with pip.
Papers that mentioned: 1

Very Likely Science (100)

pypi: beatbox

A Python library for querying/updating Saleforce.com data via SOAP API
Papers that mentioned: 1

Possibly Science (35)

pypi: beat

'Bayesian Earthquake Analysis Tool'
Papers that mentioned: 1

Very Likely Science (90)

pypi: hardware

Hardware detection and classification utilities
Papers that mentioned: 1

Very Likely Science (85)

pypi: displayer

Batch display library for images in a directory
Papers that mentioned: 1

Very Likely Science (65)

cran: SimCorMultRes

Simulates Correlated Multinomial Responses
Papers that mentioned: 1

Very Likely Science (100)

pypi: bcrypt

Modern password hashing for your software and your servers
Papers that mentioned: 1

Very Likely Science (85)

pypi: DeepSR

A Toolkit for Super Resolution with Deep Learning Algorithms
Papers that mentioned: 1

Very Likely Science (90)

pypi: bcca

Helpers from Base Camp Coding Academy
Papers that mentioned: 1

Very Likely Science (65)

cran: RegularizedSCA

Regularized Simultaneous Component Based Data Integration
Papers that mentioned: 1

Very Likely Science (75)

cran: registr

Curve Registration for Exponential Family Functional Data
Papers that mentioned: 1

Very Likely Science (83)

pypi: pbd

Pbd is a Python module to disassemble serialized protocol buffers descriptors (https://developers.google.com/protocol-buffers/).
Papers that mentioned: 1

Very Likely Science (65)

pypi: harmonica

"Forward modeling, inversion, and processing gravity and magnetic data"
Papers that mentioned: 1

Very Likely Science (100)

pypi: mutation

test mutations for pytest.
Papers that mentioned: 1

Very Likely Science (65)

pypi: harmonypy

A data integration algorithm.
Papers that mentioned: 1

Very Likely Science (100)

pypi: FileIO

This package contains File IO functions
Papers that mentioned: 1

Very Likely Science (65)

pypi: mute

Muon Intensity Code
Papers that mentioned: 1

Very Likely Science (90)

cran: neural

Neural Networks
Papers that mentioned: 1

Very Likely Science (85)

pypi: deepposekit

a toolkit for pose estimation using deep learning
Papers that mentioned: 1

Very Likely Science (100)

pypi: FOFA

Python library for FOFA (https://fofa.info)
Papers that mentioned: 1

Very Likely Science (65)

pypi: FoneAstra

Django package necessary for running a FoneAstra server.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PathCORE-T

Python 3 implementation of PathCORE-T analysis methods
Papers that mentioned: 1

Very Likely Science (100)

cran: XHWE

X Chromosome Hardy-Weinberg Equilibrium
Papers that mentioned: 1

Likely Science (50)

pypi: bam2fasta

tool for converting a bam file to fastas
Papers that mentioned: 1

Very Likely Science (65)

pypi: empirical

Emperical Method of Fundamental Solutions solver for Python.
Papers that mentioned: 1

Very Likely Science (80)

pypi: bal

A framework for analyzing and manipulating binary data
Papers that mentioned: 1

Very Likely Science (65)

cran: RIFS

Random Iterated Function System
Papers that mentioned: 1

Very Likely Science (75)

pypi: SDDetector

lightweight video detection
Papers that mentioned: 1

Very Likely Science (65)

pypi: django-blastplus

A simple Django app to conduct web-based blast+ local alignment search.
Papers that mentioned: 1

Very Likely Science (80)

pypi: edtools

Collection of tools for automated processing and clustering of electron diffraction data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: frac

Rational approximations to numbers
Papers that mentioned: 1

Very Likely Science (80)

pypi: DeepNN

深度学习工具类
Papers that mentioned: 1

Very Likely Science (65)

pypi: django-mongo-auth

Django authentication based on an extensible MongoEngine user class.
Papers that mentioned: 1

Very Likely Science (65)

pypi: bamboo

A stream routing service
Papers that mentioned: 1

Very Likely Science (80)

cran: RKEEL

Using 'KEEL' in R Code
Papers that mentioned: 1

Very Likely Science (75)

cran: RMallow

Fit Multi-Modal Mallows' Models to Ranking Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: sde

A CLI tool to edit simple JSON and YAML data files
Papers that mentioned: 1

Very Likely Science (65)

pypi: omadb

Client to the OMA browser, using the REST API.
Papers that mentioned: 1

Very Likely Science (100)

pypi: dlclib

a wrapper of DeepLabCut for its ease of use.
Papers that mentioned: 1

Very Likely Science (90)

pypi: mvl

A package which implements various systems of n valued logic.
Papers that mentioned: 1

Very Likely Science (85)

pypi: dlsym

Papers that mentioned: 1

Very Likely Science (75)

pypi: gar

gar brings context-specific tests to nose
Papers that mentioned: 1

Very Likely Science (65)

pypi: galaxyxml

Galaxy XML generation library
Papers that mentioned: 1

Very Likely Science (65)