Packages with Software Mentions in Scientific Papers

bioconductor: sesame

SEnsible Step-wise Analysis of DNA MEthylation BeadChips
Papers that mentioned: 2

Very Likely Science (100)

pypi: scikit-video

Video Processing in Python
Papers that mentioned: 2

Very Likely Science (80)

cran: dr

Methods for Dimension Reduction for Regression
Papers that mentioned: 2

Very Likely Science (93)

cran: landsat

Radiometric and Topographic Correction of Satellite Imagery
Papers that mentioned: 2

Very Likely Science (75)

cran: doRedis

'Foreach' Parallel Adapter Using the 'Redis' Database
Papers that mentioned: 2

Very Likely Science (81)

A simple in-process python scheduler library with asyncio, threading and timezone support. Use datetime standard library objects for planning of Jobs depending on time cycles, fixed times, weekdays, dates, weights, offsets and execution counts.
Papers that mentioned: 2

Likely Science (55)

bioconductor: BPRMeth

Model higher-order methylation profiles
Papers that mentioned: 2

Very Likely Science (90)

cran: CARLIT

Ecological Quality Ratios Calculation and Plot
Papers that mentioned: 2

Very Likely Science (60)

cran: GAabbreviate

Abbreviating Items Measures using Genetic Algorithms
Papers that mentioned: 2

Very Likely Science (93)

bioconductor: TBSignatureProfiler

Profile RNA-Seq Data Using TB Pathway Signatures
Papers that mentioned: 2

Very Likely Science (100)

pypi: pr

A high-level shorthand print formatter for Python 3 or above
Papers that mentioned: 2

Very Likely Science (65)

cran: dash

An Interface to the Dash Ecosystem for Authoring Reactive Web Applications
Papers that mentioned: 2

Very Likely Science (75)

cran: card

Cardiovascular and Autonomic Research Design
Papers that mentioned: 2

Very Likely Science (100)

cran: later

Utilities for Scheduling Functions to Execute Later with Event Loops
Papers that mentioned: 2

Very Likely Science (85)

bioconductor: Rtreemix

Rtreemix: Mutagenetic trees mixture models.
Papers that mentioned: 2

Very Likely Science (100)

pypi: connect

Simple to use IPv6 compatible Internet connection functions
Papers that mentioned: 2

Very Likely Science (65)

cran: gambin

Fit the Gambin Model to Species Abundance Distributions
Papers that mentioned: 2

Very Likely Science (99)

cran: SegCorr

Detecting Correlated Genomic Regions
Papers that mentioned: 2

Very Likely Science (75)

pypi: molecule

Molecule aids in the development and testing of Ansible roles
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: runibic

runibic: row-based biclustering algorithm for analysis of gene expression data in R
Papers that mentioned: 2

Very Likely Science (100)

pypi: infinity

All-in-one infinity value for Python. Can be compared to any object.
Papers that mentioned: 2

Very Likely Science (65)

bioconductor: alpine

alpine
Papers that mentioned: 2

Very Likely Science (90)

bioconductor: SDAMS

Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data
Papers that mentioned: 2

Very Likely Science (100)

cran: cpr

Control Polygon Reduction
Papers that mentioned: 2

Very Likely Science (100)

bioconductor: RUVcorr

Removal of unwanted variation for gene-gene correlations and related analysis
Papers that mentioned: 2

Very Likely Science (100)

pypi: tulip

Temporal Logic Planning (TuLiP) Toolbox
Papers that mentioned: 2

Very Likely Science (80)

pypi: pyhsmm

Bayesian inference in HSMMs and HMMs
Papers that mentioned: 2

Very Likely Science (100)

pypi: spass

Simple and Secure passphrases
Papers that mentioned: 2

Likely Science (40)

cran: readODS

Read and Write ODS Files
Papers that mentioned: 2

Very Likely Science (95)

cran: tables

Formula-Driven Table Generation
Papers that mentioned: 2

Very Likely Science (75)

pypi: pylibseq

Python interface to libsequence.
Papers that mentioned: 2

Very Likely Science (100)

pypi: properties

properties: an organizational aid and wrapper for validation and tab completion of class properties
Papers that mentioned: 2

Very Likely Science (80)

pypi: sgr

SageMaker Registry
Papers that mentioned: 2

Very Likely Science (65)

pypi: nmrstarlib

Python library for parsing data from NMR-STAR format files
Papers that mentioned: 2

Very Likely Science (100)

pypi: pySOT

Surrogate Optimization Toolbox
Papers that mentioned: 2

Very Likely Science (100)

pypi: pyltp

pyltp: the python extension for LTP 3
Papers that mentioned: 2

Very Likely Science (100)

pypi: oryx

Probabilistic programming and deep learning in JAX
Papers that mentioned: 2

Very Likely Science (75)

pypi: NanoCount

NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Papers that mentioned: 2

Very Likely Science (100)

pypi: transform

Transform MQL Client Library
Papers that mentioned: 2

Very Likely Science (80)

pypi: no

no
Papers that mentioned: 2

Very Likely Science (65)

pypi: PyChem

A platform-independent graphical environment for multivariate analysis incorporating a number of categorical and quanitative multivariate modelling routines
Papers that mentioned: 2

Very Likely Science (90)

pypi: simpl

simpl is a collection of useful, common python libraries, primarily for building web services and APIs
Papers that mentioned: 2

Very Likely Science (100)

pypi: kaplan

A computer-assisted translation tool package
Papers that mentioned: 2

Very Likely Science (65)

cran: zonator

Utilities for Zonation Spatial Conservation Prioritization Software
Papers that mentioned: 2

Very Likely Science (65)

cran: StereoMorph

Stereo Camera Calibration and Reconstruction
Papers that mentioned: 2

Very Likely Science (75)

pypi: spip

pip <3 dnf/apt-get
Papers that mentioned: 2

Very Likely Science (65)

pypi: kb

Access to National Library of the Netherlands datasets
Papers that mentioned: 2

Very Likely Science (100)

pypi: order

Pythonic class collection that helps you structure external data from LHC / HEP experiments.
Papers that mentioned: 2

Very Likely Science (65)

pypi: intelligence

Python library for navigating the internet
Papers that mentioned: 2

Very Likely Science (65)

pypi: pymrmr

Python3 binding to mRMR Feature Selection algorithm
Papers that mentioned: 2

Very Likely Science (75)

pypi: Pweave

Scientific reports with embedded python computations with reST, LaTeX or markdown
Papers that mentioned: 2

Very Likely Science (90)

pypi: kat

An unofficial Python API for http://kickass.to/
Papers that mentioned: 2

Very Likely Science (65)

cran: readbulk

Read and Combine Multiple Data Files
Papers that mentioned: 2

Very Likely Science (85)

pypi: step

The first step to automate things; from a Markdown into a CLI
Papers that mentioned: 2

Very Likely Science (65)

pypi: Owlready

A module for ontology-oriented programming in Python: load OWL 2.0 ontologies as Python objects, modify them, save to OWL XML, and perform reasoning via HermiT. It can also generate dialog boxes for editing instances.
Papers that mentioned: 2

Very Likely Science (80)

pypi: TIREX

Dimensionality Reduction in extreme regions
Papers that mentioned: 2

Very Likely Science (80)

pypi: ImageStack

Create Images by Stacking them
Papers that mentioned: 2

Very Likely Science (80)

pypi: p2p

Tribune Content Services API wrapper
Papers that mentioned: 2

Very Likely Science (65)

pypi: Specter

Specter is a spec-based testing library to help facilitate BDD-testing in Python.
Papers that mentioned: 2

Very Likely Science (65)

pypi: p3

a minimal d3 for python
Papers that mentioned: 2

Very Likely Science (65)

pypi: PyOTA

IOTA API library for Python
Papers that mentioned: 2

Likely Science (55)

pypi: NanoCap

Application and libraries for the generation of carbon fullerenes, nanotubes and capped nanotubes
Papers that mentioned: 2

Very Likely Science (65)

pypi: packet

create classes to (un)pack packets to/from objects with named fields
Papers that mentioned: 2

Very Likely Science (80)

pypi: dropbox

Official Dropbox API Client
Papers that mentioned: 2

Very Likely Science (100)

pypi: simsim

Simple python code similarity checker
Papers that mentioned: 2

Very Likely Science (65)

pypi: pako

The universal package manager library
Papers that mentioned: 2

Very Likely Science (80)

pypi: PAL2

PTA analysis software
Papers that mentioned: 2

Very Likely Science (100)

pypi: Speedometer

Console monitor of the rate of data across a network connection or data being stored in a file.
Papers that mentioned: 2

Very Likely Science (90)

pypi: spektral

Graph Neural Networks with Keras and TensorFlow.
Papers that mentioned: 2

Very Likely Science (75)

pypi: pSQL

SQL statement wrapper class
Papers that mentioned: 2

Very Likely Science (65)

pypi: tesseract

Tesselation based Recovery of Amorphous halo Concentrations
Papers that mentioned: 2

Very Likely Science (80)

pypi: sphere

Geometry on the sphere
Papers that mentioned: 2

Very Likely Science (65)

pypi: Pyrebase

A simple python wrapper for the Firebase API
Papers that mentioned: 2

Very Likely Science (65)

cran: PWD

Time Series Regression Using the Power Weighted Densities (PWD) Approach
Papers that mentioned: 2

Very Likely Science (93)

pypi: palindrome

A simple palindrome checker
Papers that mentioned: 2

Very Likely Science (65)

pypi: koala

KlayOut mAsk Layout Automation (KOALA) provides a user-friendly, easy-to-use interface for (photo)mask design.
Papers that mentioned: 2

Very Likely Science (65)

cran: rebird

R Client for the eBird Database of Bird Observations
Papers that mentioned: 2

Very Likely Science (100)

cran: RcppDE

Global Optimization by Differential Evolution in C++
Papers that mentioned: 2

Very Likely Science (85)

pypi: sin

<currently undefined>
Papers that mentioned: 2

Very Likely Science (65)

cran: Rcplex

R Interface to CPLEX
Papers that mentioned: 2

Very Likely Science (75)

cran: SCRIP

An Accurate Simulator for Single-Cell RNA Sequencing Data
Papers that mentioned: 2

Very Likely Science (100)

pypi: SensorData

Storing sensordata in DB
Papers that mentioned: 2

Very Likely Science (65)

pypi: par

A simple structured text parser project
Papers that mentioned: 2

Very Likely Science (65)

cran: speech

Legislative Speeches
Papers that mentioned: 2

Very Likely Science (100)

cran: scoringRules

Scoring Rules for Parametric and Simulated Distribution Forecasts
Papers that mentioned: 2

Very Likely Science (100)

pypi: lmz

return lists
Papers that mentioned: 2

Very Likely Science (65)

pypi: noisereduce

Noise reduction using Spectral Gating in Python
Papers that mentioned: 2

Very Likely Science (100)

cran: redux

R Bindings to 'hiredis'
Papers that mentioned: 2

Very Likely Science (75)

cran: regmedint

Regression-Based Causal Mediation Analysis with Interaction and Effect Modification Terms
Papers that mentioned: 2

Very Likely Science (100)

cran: speedglm

Fitting Linear and Generalized Linear Models to Large Data Sets
Papers that mentioned: 2

Very Likely Science (85)

pypi: tempo

Tempo Service
Papers that mentioned: 2

Very Likely Science (65)

pypi: seqlog

SeqLog enables logging from Python to Seq.
Papers that mentioned: 2

Very Likely Science (65)

pypi: logit

A private log for humans
Papers that mentioned: 2

Very Likely Science (65)

cran: snakecase

Convert Strings into any Case
Papers that mentioned: 2

Very Likely Science (75)

pypi: tables

Hierarchical datasets for Python
Papers that mentioned: 2

Very Likely Science (80)

cran: SeuratObject

Data Structures for Single Cell Data
Papers that mentioned: 2

Very Likely Science (100)

pypi: Servant

Python 3 asyncio web server
Papers that mentioned: 2

Very Likely Science (65)

pypi: pyvis

A Python network graph visualization library
Papers that mentioned: 2

Very Likely Science (100)

pypi: nolds

Nonlinear measures for dynamical systems (based on one-dimensional time series)
Papers that mentioned: 2

Very Likely Science (90)

cran: subniche

Within Outlying Mean Indexes: Refining the OMI Analysis
Papers that mentioned: 2

Very Likely Science (100)