Packages with Software Mentions in Scientific Papers

pypi: pypdb

A Python wrapper for the RCSB Protein Data Bank (PDB) API
Papers that mentioned: 1

Very Likely Science (100)

pypi: pynnotator

A Python Annotation Framework for VCFs using multiple tools (Ex. VEP, SnpEff and SnpSift) and databases (Ex. 1000genomes, dbSNP and dbnfsp) .
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyNLPIR

A Python wrapper around the NLPIR/ICTCLAS Chinese segmentation software.
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyNomo

PyNomo - Python Nomograms
Papers that mentioned: 1

Very Likely Science (80)

pypi: PyNonpar

Nonparametric Test Statistics
Papers that mentioned: 1

Very Likely Science (90)

pypi: specification

Python implementaion of the `Specification` pattern
Papers that mentioned: 1

Very Likely Science (65)

pypi: pynrrd

Pure python module for reading and writing NRRD files.
Papers that mentioned: 1

Very Likely Science (100)

pypi: snapshotter

Very easy incremental snapshot backups using rsync
Papers that mentioned: 1

Likely Science (40)

pypi: pyparallel

Python Parallel Port Extension
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyows

OWS utilities
Papers that mentioned: 1

Very Likely Science (80)

pypi: porter

Porter: Simple File Operations in Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: pypes

An actor based programming framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: xplotter

Explore visual insights from data in an easy and intituitive way with few lines of code.
Papers that mentioned: 1

Likely Science (55)

pypi: popeye

popeye : voxel population receptive fields from fMRI data
Papers that mentioned: 1

Very Likely Science (100)

pypi: spectrogram

Spectrogram (80MHz bandwidth) accelerator for LimeSDR
Papers that mentioned: 1

Very Likely Science (65)

pypi: popcorn

The Python implementation of Inverse
Papers that mentioned: 1

Very Likely Science (65)

pypi: pypofatu

programmatic access to pofatu-data
Papers that mentioned: 1

Very Likely Science (65)

pypi: pypoman

Python module for polyhedral geometry.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pypop

A python library to compose pop songs automatically.
Papers that mentioned: 1

Likely Science (40)

pypi: PyProcessMacro

A Python library for moderation, mediation and conditional process analysis. Based on Andrew F. Hayes Process Macro.
Papers that mentioned: 1

Very Likely Science (100)

pypi: SNAKES

SNAKES is the Net Algebra Kit for Editors and Simulators
Papers that mentioned: 1

Very Likely Science (80)

pypi: polymorphism

Ad hoc polymorphism for Python classes!
Papers that mentioned: 1

Very Likely Science (65)

pypi: spgl1

SPGL1: A solver for large-scale sparse reconstruction.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyramid-arima

Python's forecast::auto.arima equivalent
Papers that mentioned: 1

Very Likely Science (95)

pypi: PyRAS

Papers that mentioned: 1

Very Likely Science (80)

pypi: PyRat

Python ray tracing
Papers that mentioned: 1

Very Likely Science (90)

pypi: PolyMID

PolyMID is a software package for analyzing stable-isotope tracing data.
Papers that mentioned: 1

Very Likely Science (100)

Pyreport makes notes out of a python script. It can run the script in a sandbox and capture its output. It allows for embedding RestructuredText or LaTeX comments in the code for literate programming and generates a report made of the literate comments, the code, pretty printed, and the output of the script (pyreport can capture pylab figures). This is useful for documentations, making tutorials, but also for sharing python-based calculations with colleagues.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pyret

Tools for the analysis of neural electrophysiology data
Papers that mentioned: 1

Very Likely Science (100)

pypi: spi

Pure Python SPI Interface using spidev
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyRserve

A Python client to remotely access the R statistic package via network
Papers that mentioned: 1

Very Likely Science (90)

pypi: pyrtlsdr

A Python wrapper for librtlsdr (a driver for Realtek RTL2832U based SDR's)
Papers that mentioned: 1

Very Likely Science (65)

pypi: spidev

Python bindings for Linux SPI access through spidev
Papers that mentioned: 1

Likely Science (40)

pypi: Tasty

rich, general purpose tagging engine built as a REST service
Papers that mentioned: 1

Very Likely Science (65)

pypi: snafu

Swiss Army Knife of Serverless Computing
Papers that mentioned: 1

Very Likely Science (100)

pypi: spikeextractors

Python module for extracting recorded and spike sorted extracellular data from different file types and formats
Papers that mentioned: 1

Very Likely Science (100)

pypi: polybench

Multivariate polynomial arithmetic benchmark tests.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pysat

'Supports science analysis across disparate data platforms'
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyscf

PySCF: Python-based Simulations of Chemistry Framework
Papers that mentioned: 1

Very Likely Science (90)

pypi: polo

Optimal Linear Ordering of Hierarchical Trees
Papers that mentioned: 1

Very Likely Science (65)

pypi: pysha3

SHA-3 (Keccak) for Python 2.7 - 3.5
Papers that mentioned: 1

Very Likely Science (65)

pypi: poll

Utilities for polling, retrying, and exception handling
Papers that mentioned: 1

Very Likely Science (65)

pypi: polecat

Papers that mentioned: 1

Very Likely Science (65)

pypi: pole

A micro framework for PyGtk, PDF, XML, Utilities and Brazilan NFe.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PySimpleGUI

Python GUIs for Humans. Launched in 2018. It's 2022 & PySimpleGUI is an ACTIVE & supported project. Super-simple to create custom GUI's. 325+ Demo programs & Cookbook for rapid start. Extensive documentation. Main docs at www.PySimpleGUI.org. Fun & your success are the focus. Examples using Machine Learning (GUI, OpenCV Integration), Rainmeter Style Desktop Widgets, Matplotlib + Pyplot, PIL support, add GUI to command line scripts, PDF & Image Viewers. Great for beginners & advanced GUI programmers.
Papers that mentioned: 1

Very Likely Science (90)

pypi: PyStanfordDependencies

Python interface for converting Penn Treebank trees to Universal Dependencies and Stanford Dependencies
Papers that mentioned: 1

Very Likely Science (90)

pypi: smv

A modular framework for creating applications in Apache Spark
Papers that mentioned: 1

Very Likely Science (100)

pypi: pytabix

Python interface for tabix
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytc

Tokyo Cabinet Python bindings
Papers that mentioned: 1

Very Likely Science (65)

pypi: spikesorters

Python wrappers for popular spike sorters
Papers that mentioned: 1

Very Likely Science (100)

pypi: PythonCyc

A Python interface to Pathway Tools, 2019 update
Papers that mentioned: 1

Very Likely Science (100)

pypi: pnq

Papers that mentioned: 1

Very Likely Science (80)

pypi: spiketoolkit

Python toolkit for analysis, visualization, and comparison of spike sorting output
Papers that mentioned: 1

Very Likely Science (95)

pypi: python-graph

A library for working with graphs in Python
Papers that mentioned: 1

Very Likely Science (80)

pypi: pythongrid

High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ
Papers that mentioned: 1

Very Likely Science (65)

pypi: pnp

Pull 'n' Push
Papers that mentioned: 1

Very Likely Science (65)

pypi: python-rocksdb

Python bindings for RocksDB
Papers that mentioned: 1

Very Likely Science (65)

pypi: pnoise

Vectorized port of Processing noise() function
Papers that mentioned: 1

Very Likely Science (80)

pypi: ZMS

ZMS: Simplified Content Modelling
Papers that mentioned: 1

Very Likely Science (90)

pypi: python-pptx

Generate and manipulate Open XML PowerPoint (.pptx) files
Papers that mentioned: 1

Likely Science (40)

pypi: spikewidgets

Python widgets for spike sorting and electrophysiology
Papers that mentioned: 1

Very Likely Science (100)

pypi: pytleap

Interface to connect to a TP-Link EAP.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytl

Command line tool that parses python file, enumerates classes and methods as a tree structure.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pytoda

pytoda: PaccMann PyTorch Dataset Classes.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pytri

Pytri, redux
Papers that mentioned: 1

Very Likely Science (85)

pypi: pyts

A python package for time series classification
Papers that mentioned: 1

Very Likely Science (100)

pypi: pytsa

Simple, human-readable, fully tested, signature-preserving Python decorators to ensure your method abides to its contract.
Papers that mentioned: 1

Very Likely Science (65)

pypi: SpiNNakerGraphFrontEnd

Front end to the SpiNNaker tool chain which uses a basic graph
Papers that mentioned: 1

Very Likely Science (100)

pypi: PyTumblr

A Python Tumblr API v2 Client
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyTTE

Package to compute X-ray diffraction curves of bent crystals by numerically solving the 1D Takagi-Taupin equation.
Papers that mentioned: 1

Very Likely Science (85)

pypi: PyWavefront

Python library for importing Wavefront .obj files
Papers that mentioned: 1

Very Likely Science (100)

pypi: pywindow

My short description for my project.
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyX

Python package for the generation of PostScript, PDF, and SVG files
Papers that mentioned: 1

Very Likely Science (80)

pypi: spl

Spigot/Bukkit Plugin Manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: pyxmolpp2

Utils for processing MD
Papers that mentioned: 1

Very Likely Science (65)

pypi: PyxMPI

Pyrex wrapper for MPI (Message Passing Interface) 1.1
Papers that mentioned: 1

Very Likely Science (65)

pypi: pmr

Process memory-maps-based restarter
Papers that mentioned: 1

Very Likely Science (65)

pypi: splicer

the world is a database now you can query it with SQL
Papers that mentioned: 1

Very Likely Science (65)

pypi: q2-micom

QIIME 2 plugin for metabolic modeling of microbial communities.
Papers that mentioned: 1

Very Likely Science (100)

pypi: pmap

a multithreaded map operator
Papers that mentioned: 1

Likely Science (40)

pypi: QAD

Quick and dirty web app scanner
Papers that mentioned: 1

Very Likely Science (65)

pypi: QBroker

QBroker is a minimal async wrapper for RPC via AMQP
Papers that mentioned: 1

Likely Science (40)

pypi: strict

Type and subject matter checks for functions and classes.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pmacs

Python editing MACroS
Papers that mentioned: 1

Very Likely Science (65)

pypi: smqpp

Smartseq2 preprocessing toolkit
Papers that mentioned: 1

Very Likely Science (71)

pypi: SplitStrains

SplitStrains detects and separates mixed strains of Mycobacterium tuberculosis.
Papers that mentioned: 1

Very Likely Science (65)

pypi: QGL

Quantum Gate Language (QGL) is a domain specific language embedded in python for specifying pulse sequences.
Papers that mentioned: 1

Very Likely Science (80)

pypi: pmercury

Python tool for network (TLS, etc.) fingerprinting
Papers that mentioned: 1

Very Likely Science (80)

pypi: QLog

Logger
Papers that mentioned: 1

Very Likely Science (65)

pypi: qic

data(JSON/XML/YAML) command line query tools with interactive mode.
Papers that mentioned: 1

Very Likely Science (65)

pypi: smpl

SiMPLe plotting and fitting
Papers that mentioned: 1

Very Likely Science (75)

pypi: smote-variants

Variants of the synthetic minority oversampling technique (SMOTE) for imbalanced learning
Papers that mentioned: 1

Very Likely Science (92)

pypi: plusplus

Enable the ++x and --x expressions in Python
Papers that mentioned: 1

Very Likely Science (95)

pypi: patterns

Pattern matching for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: PluginRegistry

Plugin Registry for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: survive

Survival analysis in Python
Papers that mentioned: 1

Very Likely Science (95)

pypi: spool

Send mails with yaml
Papers that mentioned: 1

Very Likely Science (65)

pypi: susan

Simple CLI note taker and free-wheeling wiki
Papers that mentioned: 1

Likely Science (40)

pypi: plugin

Papers that mentioned: 1

Very Likely Science (65)

pypi: QPT

QPT-基于Python的快捷环境封装工具
Papers that mentioned: 1

Very Likely Science (65)