Packages with Software Mentions in Scientific Papers

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Papers that mentioned: 1

Very Likely Science (65)

pypi: IRTools

a computational toolset for detection and analysis of intron retention from RNA-Seq libraries
Papers that mentioned: 1

Very Likely Science (90)

pypi: javax

Papers that mentioned: 1

Unlikely Science (0)

pypi: moth

token system using MongoDB
Papers that mentioned: 1

Very Likely Science (65)

pypi: munger

A Python module that munges all variables in a namespace, as a demonstration of some aspects of the Python language.
Papers that mentioned: 1

Very Likely Science (85)

pypi: truth

Papers that mentioned: 1

Very Likely Science (65)

cran: networktree

Recursive Partitioning of Network Models
Papers that mentioned: 1

Very Likely Science (100)

cran: cheddar

Analysis and Visualisation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: gemmi

library for structural biology
Papers that mentioned: 1

Very Likely Science (90)

pypi: motmot.fview_ext_trig

Camera trigger device with precise timing and analog input
Papers that mentioned: 1

Very Likely Science (65)

pypi: jacket

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: methimpute

Imputation-guided re-construction of complete methylomes from WGBS data
Papers that mentioned: 1

Very Likely Science (90)

pypi: clear

A cross-platform Python module that provides a clear() function which clears the terminal. That's all.
Papers that mentioned: 1

Very Likely Science (65)

pypi: misas

Model Interpretation through Sensitivity Analysis for Segmentation
Papers that mentioned: 1

Very Likely Science (100)

pypi: albatradis

Comparitive transposon mutagenesis experiment analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: wql

Exploring Water Quality Monitoring Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: gender

Get gender from name and email address
Papers that mentioned: 1

Very Likely Science (65)

cran: rNOMADS

An R Interface to the NOAA Operational Model Archive and Distribution System
Papers that mentioned: 1

Very Likely Science (75)

cran: RobustGaSP

Robust Gaussian Stochastic Process Emulation
Papers that mentioned: 1

Very Likely Science (83)

pypi: mpwt

Multiprocessing for Pathway Tools
Papers that mentioned: 1

Very Likely Science (100)

pypi: Mr_Demuxy

demultiplexs combinatorially tagged reads
Papers that mentioned: 1

Very Likely Science (80)

pypi: mrl

A sample Python project
Papers that mentioned: 1

Very Likely Science (65)

pypi: clic

A c/c++ cli
Papers that mentioned: 1

Very Likely Science (65)

pypi: continuous

Papers that mentioned: 1

Unlikely Science (0)

pypi: BacterialTyper

Bacterial identification pipeline
Papers that mentioned: 1

Very Likely Science (100)

pypi: Miscoto

Microbiome Screening and COmmunity selection using TOpology
Papers that mentioned: 1

Very Likely Science (85)

pypi: aggregate

Tools for creating and working with aggregate probability distributions.
Papers that mentioned: 1

Very Likely Science (100)

pypi: mtv

Papers that mentioned: 1

Unlikely Science (0)

pypi: realDB

A unified python interface for different DB (e.g. sqlite, pg).
Papers that mentioned: 1

Very Likely Science (65)

cran: breakDown

Model Agnostic Explainers for Individual Predictions
Papers that mentioned: 1

Very Likely Science (85)

pypi: metaspace

Create Python modules using class syntax.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: MethTargetedNGS

Perform Methylation Analysis on Next Generation Sequencing Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: torchsummary

Model summary in PyTorch similar to `model.summary()` in Keras
Papers that mentioned: 1

Very Likely Science (100)

pypi: musk

A simulations package
Papers that mentioned: 1

Very Likely Science (75)

pypi: twin

Papers that mentioned: 1

Very Likely Science (65)

pypi: xmlrpclib

Stand-alone distribution of xmlrpclib.
Papers that mentioned: 1

Very Likely Science (65)

cran: IsoCorr

Correcting Drift and Carry-over in Continuous Isotopic Measurements
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: miRSM

Inferring miRNA sponge modules in heterogeneous data
Papers that mentioned: 1

Very Likely Science (100)

pypi: backmap

Shows protein backbone structures in compact graphical form using Ramachandran numbers
Papers that mentioned: 1

Very Likely Science (80)

pypi: clintrials

clintrials is a library of clinical trial designs and methods in Python
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: SimFFPE

NGS Read Simulator for FFPE Tissue
Papers that mentioned: 1

Very Likely Science (90)

pypi: saltpack

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: babar

Elephants never forget.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: Sconify

A toolkit for performing KNN-based statistics for flow and mass cytometry data
Papers that mentioned: 1

Very Likely Science (100)

pypi: advbox

Python toolbox to create adversarial examples that fool neural networks
Papers that mentioned: 1

Very Likely Science (90)

pypi: samap

The SAMap algorithm
Papers that mentioned: 1

Very Likely Science (100)

pypi: clipkit

Alignment trimming software for phylogenetics.
Papers that mentioned: 1

Very Likely Science (90)

cran: ActivityIndex

Activity Index Calculation using Raw 'Accelerometry' Data
Papers that mentioned: 1

Very Likely Science (83)

cran: Biolinv

Modelling and Forecasting Biological Invasions
Papers that mentioned: 1

Very Likely Science (85)

cran: Biocomb

Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: latte

Interface to 'LattE' and '4ti2'
Papers that mentioned: 1

Very Likely Science (81)

pypi: reda

Reproducible Electrical Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: bigleaf

Physical and Physiological Ecosystem Properties from Eddy Covariance Data
Papers that mentioned: 1

Very Likely Science (100)

cran: adklakedata

Adirondack Long-Term Lake Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: FlowIO

FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files
Papers that mentioned: 1

Very Likely Science (85)

cran: NetWeaver

Graphic Presentation of Complex Genomic and Network Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: automlsa2

Automated Multi-Locus Sequence Analysis tool
Papers that mentioned: 1

Very Likely Science (100)

cran: rpartScore

Classification Trees for Ordinal Responses
Papers that mentioned: 1

Very Likely Science (75)

cran: adnuts

No-U-Turn MCMC Sampling for 'ADMB' Models
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RTopper

This package is designed to perform Gene Set Analysis across multiple genomic platforms
Papers that mentioned: 1

Very Likely Science (100)

cran: rpca

RobustPCA: Decompose a Matrix into Low-Rank and Sparse Components
Papers that mentioned: 1

Very Likely Science (75)

cran: rpms

Recursive Partitioning for Modeling Survey Data
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: RIPAT

Retroviral Integration Pattern Analysis Tool (RIPAT)
Papers that mentioned: 1

Very Likely Science (100)

cran: rr

Statistical Methods for the Randomized Response Technique
Papers that mentioned: 1

Very Likely Science (85)

cran: airGR

Suite of GR Hydrological Models for Precipitation-Runoff Modelling
Papers that mentioned: 1

Very Likely Science (85)

cran: boxplotdbl

Double Box Plot for Two-Axes Correlation
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: ribosomeProfilingQC

Ribosome Profiling Quality Control
Papers that mentioned: 1

Very Likely Science (100)

pypi: gimme

An ExpressJS-inspired web framework... in Python
Papers that mentioned: 1

Very Likely Science (65)

cran: aiRthermo

Atmospheric Thermodynamics and Visualization
Papers that mentioned: 1

Very Likely Science (85)

cran: algaeClassify

Determine Phytoplankton Functional Groups Based on Functional Traits
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: RepViz

Replicate oriented Visualization of a genomic region
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: REBET

The subREgion-based BurdEn Test (REBET)
Papers that mentioned: 1

Very Likely Science (75)

cran: BayesPostEst

Generate Postestimation Quantities for Bayesian MCMC Estimation
Papers that mentioned: 1

Very Likely Science (100)