Packages with Software Mentions in Scientific Papers

A series of convenience functions to make basic image processing functions such as translation, rotation, resizing, skeletonization, displaying Matplotlib images, sorting contours, detecting edges, and much more easier with OpenCV and both Python 2.7 and Python 3.
Papers that mentioned: 1

Very Likely Science (85)

pypi: Rootkit

Papers that mentioned: 1

Very Likely Science (65)

pypi: synapseclient

A client for Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.
Papers that mentioned: 1

Very Likely Science (100)

pypi: ims

Instantly stream movies/ tv episodes
Papers that mentioned: 1

Very Likely Science (65)

pypi: composer

Composer is a PyTorch library that enables you to train neural networks faster, at lower cost, and to higher accuracy.
Papers that mentioned: 1

Very Likely Science (100)

pypi: nsp

Neural Network Signal Processing
Papers that mentioned: 1

Very Likely Science (90)

pypi: aenet

Papers that mentioned: 1

Very Likely Science (65)

pypi: p4d

Python DBI module for the 4D database
Papers that mentioned: 1

Very Likely Science (85)

pypi: numexpr

Fast numerical expression evaluator for NumPy
Papers that mentioned: 1

Very Likely Science (100)

pypi: Nxt

Papers that mentioned: 1

Very Likely Science (65)

pypi: ocr

Single Character OCR
Papers that mentioned: 1

Very Likely Science (65)

pypi: oem

Python Orbit Ephemeris Message (OEM) tools
Papers that mentioned: 1

Very Likely Science (85)

pypi: baton

Python wrapper for baton.
Papers that mentioned: 1

Very Likely Science (100)

pypi: adk

A ADK-dev Kit
Papers that mentioned: 1

Very Likely Science (65)

pypi: cifti

Interface to handle CIFTI files
Papers that mentioned: 1

Very Likely Science (65)

pypi: idx

Python library used to interact with Homegate or Immoscout24 usind the IDX3.01 API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: methylcheck

Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylation array data. See https://life-epigenetics-methylcheck.readthedocs-hosted.com/en/latest/ for full documentation and examples.
Papers that mentioned: 1

Very Likely Science (100)

pypi: solace

A Modern Framework for Building Python Web Apps
Papers that mentioned: 1

Very Likely Science (65)

pypi: fmc

fmc is a simple cli application for one's own convenience.
Papers that mentioned: 1

Very Likely Science (65)

cran: cramer

Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem
Papers that mentioned: 1

Very Likely Science (85)

pypi: ictclas

My test module
Papers that mentioned: 1

Very Likely Science (65)

pypi: BatchTINTV3

BatchTINTV3 - GUI created to more efficiently sort Axona/Tint data.
Papers that mentioned: 1

Very Likely Science (85)

pypi: cjklib

Han character library for CJKV languages
Papers that mentioned: 1

Very Likely Science (65)

pypi: genemunge

Tools for munging genomics data
Papers that mentioned: 1

Very Likely Science (100)

pypi: clair

Import a Docker image layers to Clair for security analysis
Papers that mentioned: 1

Very Likely Science (75)

pypi: omero-py

Python bindings to the OMERO.blitz server
Papers that mentioned: 1

Very Likely Science (100)

pypi: omicron

Papers that mentioned: 1

Unlikely Science (0)

pypi: clipper-python

Clipper libraries for experimental structural biology data
Papers that mentioned: 1

Very Likely Science (90)

cran: COUSCOus

A Residue-Residue Contact Detecting Method
Papers that mentioned: 1

Very Likely Science (75)

cran: countcolors

Locates and Counts Pixels Within Color Range(s) in Images
Papers that mentioned: 1

Very Likely Science (75)

pypi: contain

Papers that mentioned: 1

Unlikely Science (0)

cran: corTest

Robust Tests for Equal Correlation
Papers that mentioned: 1

Very Likely Science (93)

pypi: unicodecsv

Python2's stdlib csv module is nice, but it doesn't support unicode. This module is a drop-in replacement which *does*.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ecalc

a simple Python-based calculator for network engineers/researchers
Papers that mentioned: 1

Very Likely Science (75)

cran: NitrogenUptake2016

Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata
Papers that mentioned: 1

Very Likely Science (85)

pypi: snorkel

A system for quickly generating training data with weak supervision
Papers that mentioned: 1

Very Likely Science (100)

pypi: httpie

HTTPie: modern, user-friendly command-line HTTP client for the API era.
Papers that mentioned: 1

Very Likely Science (80)

pypi: onnx

Open Neural Network Exchange
Papers that mentioned: 1

Very Likely Science (100)

pypi: opencv-contrib-python

Wrapper package for OpenCV python bindings.
Papers that mentioned: 1

Very Likely Science (80)

pypi: rosapi

Routerboard API
Papers that mentioned: 1

Very Likely Science (65)

pypi: generics

A classy toolkit designed with OOP in mind.
Papers that mentioned: 1

Very Likely Science (65)

cran: seismic

Predict Information Cascade by Self-Exciting Point Process
Papers that mentioned: 1

Very Likely Science (75)

cran: sen2r

Find, Download and Process Sentinel-2 Data
Papers that mentioned: 1

Very Likely Science (75)

cran: nimbleEcology

Distributions for Ecological Models in 'nimble'
Papers that mentioned: 1

Very Likely Science (100)

pypi: xcell

Python CLI and module for running the xCell package with Python Pandas inputs and outputs.
Papers that mentioned: 1

Very Likely Science (90)

pypi: mcx

Express & compile probabilistic programs for performant inference on CPU & GPU. Powered by JAX.
Papers that mentioned: 1

Very Likely Science (65)

pypi: orffinder

Open Reading Frame finder natively coded in Python.
Papers that mentioned: 1

Very Likely Science (85)

cran: MetGen

Stochastic Weather Generator
Papers that mentioned: 1

Very Likely Science (75)

pypi: fluopi

Module to manage and analyze time-lapse data obtained with fluopi equipment
Papers that mentioned: 1

Very Likely Science (100)

cran: MethodCompare

Bias and Precision Plots
Papers that mentioned: 1

Very Likely Science (75)

cran: pyramid

Draw Population Pyramid
Papers that mentioned: 1

Very Likely Science (75)

cran: SASxport

Papers that mentioned: 1

Unlikely Science (0)

pypi: team

Papers that mentioned: 1

Unlikely Science (0)

cran: scrapeR

Papers that mentioned: 1

Unlikely Science (0)

pypi: dasher

Generate interactive plotly dash dashboards in an instant
Papers that mentioned: 1

Very Likely Science (65)

pypi: case

Python unittest Utilities
Papers that mentioned: 1

Very Likely Science (65)

cran: SemNeT

Methods and Measures for Semantic Network Analysis
Papers that mentioned: 1

Very Likely Science (95)

cran: nevada

Network-Valued Data Analysis
Papers that mentioned: 1

Very Likely Science (93)

pypi: castle

Castle protects your users from account compromise
Papers that mentioned: 1

Very Likely Science (65)

pypi: ordr

Python SDK for the ORDR API
Papers that mentioned: 1

Very Likely Science (65)

pypi: fd

File system database (fd)
Papers that mentioned: 1

Very Likely Science (65)

cran: PoisBinOrd

Data Generation with Poisson, Binary and Ordinal Components
Papers that mentioned: 1

Very Likely Science (83)

pypi: html5

HTML parser based on the WHATWG HTML specification
Papers that mentioned: 1

Very Likely Science (85)

pypi: unitig-caller

unitig-caller: wrapper around mantis to detect presence of sequence elements
Papers that mentioned: 1

Very Likely Science (100)

pypi: ora

Alternative time and date library
Papers that mentioned: 1

Very Likely Science (65)

cran: contact

Creating Contact and Social Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: ConSpline

Partial Linear Least-Squares Regression using Constrained Splines
Papers that mentioned: 1

Very Likely Science (93)

pypi: jpeglib

Python envelope for the popular C librarylibjpeg for handling JPEG files.
Papers that mentioned: 1

Very Likely Science (100)

cran: mdthemes

Markdown Themes for 'ggplot2'
Papers that mentioned: 1

Very Likely Science (75)

pypi: hnswlib

hnswlib
Papers that mentioned: 1

Very Likely Science (71)

cran: COMPoissonReg

Conway-Maxwell Poisson (COM-Poisson) Regression
Papers that mentioned: 1

Very Likely Science (100)

pypi: catenae

Python library for easy development of scalable stream processing topologies.
Papers that mentioned: 1

Very Likely Science (65)

pypi: e3nn

Equivariant convolutional neural networks for the group E(3) of 3 dimensional rotations, translations, and mirrors.
Papers that mentioned: 1

Very Likely Science (75)

pypi: eep

Emacs style, point based string search-replace library for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: yall

Yet Another Lazy Loader for Python
Papers that mentioned: 1

Very Likely Science (65)

cran: complexity

Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Papers that mentioned: 1

Very Likely Science (75)

cran: colorfulVennPlot

Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
Papers that mentioned: 1

Very Likely Science (75)

pypi: tellurium

Tellurium: An biological modeling environment for Python
Papers that mentioned: 1

Very Likely Science (75)

pypi: telomerehunter

Estimation of Telomere Content from WGS Data
Papers that mentioned: 1

Very Likely Science (65)

pypi: ter

Papers that mentioned: 1

Unlikely Science (0)

cran: CoClust

Copula Based Cluster Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: PartSeg

PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
Papers that mentioned: 1

Very Likely Science (100)

pypi: textblob

Simple, Pythonic text processing. Sentiment analysis, part-of-speech tagging, noun phrase parsing, and more.
Papers that mentioned: 1

Very Likely Science (70)

pypi: cbase

Collective Knowledge DataBase
Papers that mentioned: 1

Very Likely Science (85)

cran: cmaes

Covariance Matrix Adapting Evolutionary Strategy
Papers that mentioned: 1

Very Likely Science (85)

cran: chronosphere

Evolving Earth System Variables
Papers that mentioned: 1

Very Likely Science (64)

cran: JPEN

Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty
Papers that mentioned: 1

Very Likely Science (93)

cran: chromer

Interface to Chromosome Counts Database API
Papers that mentioned: 1

Very Likely Science (98)

pypi: pandoc-xnos

Library code for the pandoc-xnos filter suite.
Papers that mentioned: 1

Very Likely Science (65)

cran: networktree

Recursive Partitioning of Network Models
Papers that mentioned: 1

Very Likely Science (100)

cran: cheddar

Analysis and Visualisation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: banjo

Not a placeholder for an internal library
Papers that mentioned: 1

Very Likely Science (65)