Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

cran: GWASExactHW

Exact Hardy-Weinburg testing for Genome Wide Association Studies
Papers that mentioned: 1

Very Likely Science (83)

cran: lowpassFilter

Lowpass Filtering
Papers that mentioned: 1

Very Likely Science (83)

cran: NetworkInference

Inferring Latent Diffusion Networks
Papers that mentioned: 1

Very Likely Science (100)

pypi: flaimapper

Fragment Location Annotation Identification Mapper
Papers that mentioned: 1

Very Likely Science (95)

cran: gsynth

Generalized Synthetic Control Method
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: KinSwingR

KinSwingR: network-based kinase activity prediction
Papers that mentioned: 1

Very Likely Science (100)

cran: GSSE

Genotype-Specific Survival Estimation
Papers that mentioned: 1

Very Likely Science (75)

pypi: Flag

Simple flag library for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: aclust

streaming agglomerative clustering
Papers that mentioned: 1

Very Likely Science (100)

cran: capl

Compute and Visualize CAPL-2 Scores and Interpretations
Papers that mentioned: 1

Likely Science (50)

cran: LS2W

Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Papers that mentioned: 1

Very Likely Science (83)

pypi: audition

A small web framework that validates requests and provides an API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ach

Library to create and parse ACH files (NACHA)
Papers that mentioned: 1

Very Likely Science (85)

pypi: rca

Recompress Audio
Papers that mentioned: 1

Likely Science (40)

bioconductor: IWTomics

Interval-Wise Testing for Omics Data
Papers that mentioned: 1

Very Likely Science (98)

bioconductor: iterativeBMAsurv

The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: audioread

Multi-library, cross-platform audio decoding.
Papers that mentioned: 1

Very Likely Science (100)

pypi: Dyson

Dyson Selenium framework.
Papers that mentioned: 1

Very Likely Science (100)

pypi: acd

Hierarchical interpretatations and contextual decomposition in pytorch
Papers that mentioned: 1

Very Likely Science (100)

pypi: band

BERT Application
Papers that mentioned: 1

Very Likely Science (65)

cran: bootComb

Combine Parameter Estimates via Parametric Bootstrap
Papers that mentioned: 1

Very Likely Science (75)

cran: coil

Contextualization and Evaluation of COI-5P Barcode Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: fizz

fizzbuzz is a python package for acing fizzbuzz questions at coding interviews.
Papers that mentioned: 1

Very Likely Science (65)

cran: groupedSurv

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function
Papers that mentioned: 1

Very Likely Science (83)

cran: tricolore

A Flexible Color Scale for Ternary Compositions
Papers that mentioned: 1

Very Likely Science (75)

pypi: ReEncrypt

A Encryption Method
Papers that mentioned: 1

Very Likely Science (65)

pypi: aud

aud is a python package that aims to make bulk file edits easy enough for anyone with minimal scripting or python knowledge
Papers that mentioned: 1

Very Likely Science (80)

cran: cccp

Cone Constrained Convex Problems
Papers that mentioned: 1

Very Likely Science (75)

pypi: attune

Tools for tuning optical parametric amplifiers and multidimensional spectrometers.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: Icens

NPMLE for Censored and Truncated Data
Papers that mentioned: 1

Very Likely Science (75)

cran: mtsdi

Multivariate Time Series Data Imputation
Papers that mentioned: 1

Very Likely Science (85)

pypi: flowtracks

Library for handling of PTV trajectory database.
Papers that mentioned: 1

Very Likely Science (100)

pypi: abp

Port of C++ due to Simon Anders and Hans J Briegel
Papers that mentioned: 1

Very Likely Science (67)

cran: CDFt

Downscaling and Bias Correction via Non-Parametric CDF-Transform
Papers that mentioned: 1

Very Likely Science (75)

pypi: RC6

RC6 encode-decoder
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: xmapbridge

Export plotting files to the xmapBridge for visualisation in X:Map
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: hypergraph

A package providing hypergraph data structures
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: hyperdraw

Visualizing Hypergaphs
Papers that mentioned: 1

Very Likely Science (98)

cran: mosaicCore

Common Utilities for Other MOSAIC-Family Packages
Papers that mentioned: 1

Very Likely Science (100)

pypi: mbc

Wrapper for the moonlist api
Papers that mentioned: 1

Very Likely Science (65)

cran: mvnfast

Fast Multivariate Normal and Student's t Methods
Papers that mentioned: 1

Very Likely Science (100)

cran: lsplsGlm

Classification using LS-PLS for Logistic Regression
Papers that mentioned: 1

Very Likely Science (85)

pypi: about

Software Metadata for Humans
Papers that mentioned: 1

Very Likely Science (65)

pypi: banjo

Not a placeholder for an internal library
Papers that mentioned: 1

Very Likely Science (65)

cran: GREMLINS

Generalized Multipartite Networks
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: epivizr

R Interface to epiviz web app
Papers that mentioned: 1

Very Likely Science (90)

cran: chameleon

Automatic Colors for Multi-Dimensional Data
Papers that mentioned: 1

Very Likely Science (75)

cran: tribe

Play with the Tribe of Attributes
Papers that mentioned: 1

Very Likely Science (75)

cran: LVGP

Latent Variable Gaussian Process Modeling with Qualitative and Quantitative Input Variables
Papers that mentioned: 1

Very Likely Science (93)

pypi: mcs

Monticello repository synchronization tool
Papers that mentioned: 1

Likely Science (40)

cran: cheddar

Analysis and Visualisation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: mkl

Intel® oneAPI Math Kernel Library
Papers that mentioned: 1

Very Likely Science (80)

pypi: Anika

this is just a test, please ignore it
Papers that mentioned: 1

Very Likely Science (65)

pypi: rec

a collection of some useful regular expressions.
Papers that mentioned: 1

Very Likely Science (75)

cran: gRapfa

Acyclic Probabilistic Finite Automata
Papers that mentioned: 1

Very Likely Science (75)

cran: networktree

Recursive Partitioning of Network Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: engal

Simple photo gallery
Papers that mentioned: 1

Very Likely Science (65)

pypi: fitted

Machine learning tools
Papers that mentioned: 1

Very Likely Science (90)

pypi: atp

An adaptive thread pool implementation
Papers that mentioned: 1

Likely Science (40)

pypi: pdf2jpg

Wrapper to convert PDF files into jpg
Papers that mentioned: 1

Likely Science (40)

bioconductor: HiCBricks

Framework for Storing and Accessing Hi-C Data Through HDF Files
Papers that mentioned: 1

Very Likely Science (65)

pypi: squad

Software Quality Dashboard
Papers that mentioned: 1

Very Likely Science (65)

cran: childesr

Accessing the 'CHILDES' Database
Papers that mentioned: 1

Very Likely Science (100)

cran: choiceDes

Design Functions for Choice Studies
Papers that mentioned: 1

Very Likely Science (75)

cran: MAnorm2

Tools for Normalizing and Comparing ChIP-seq Samples
Papers that mentioned: 1

Very Likely Science (100)

pypi: dynesty

A dynamic nested sampling package for computing Bayesian posteriors and evidences.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: h5vc

Managing alignment tallies using a hdf5 backend
Papers that mentioned: 1

Very Likely Science (75)

pypi: instruct

Compact/flexible/fast/strictly-typed/(add other ridiculous demands) object system - similar to Pydantic but focused on `__slot__`ed objects
Papers that mentioned: 1

Very Likely Science (85)

cran: chromer

Interface to Chromosome Counts Database API
Papers that mentioned: 1

Very Likely Science (98)

pypi: fitparse

Python library to parse ANT/Garmin .FIT files
Papers that mentioned: 1

Very Likely Science (65)

pypi: abf

Abstract Binary Format manipulation : elf pe mach-o
Papers that mentioned: 1

Very Likely Science (65)

cran: JOPS

Practical Smoothing with P-Splines
Papers that mentioned: 1

Very Likely Science (75)

pypi: Anemone

Monitor long running analyses by remote plotting of selected variables
Papers that mentioned: 1

Very Likely Science (90)

cran: chronosphere

Evolving Earth System Variables
Papers that mentioned: 1

Very Likely Science (64)

pypi: atelier

A collection of tools for software artists
Papers that mentioned: 1

Very Likely Science (80)

pypi: fitlins

Fit Linear Models to BIDS Datasets
Papers that mentioned: 1

Very Likely Science (100)

pypi: reb

Regular Expression Beautiful
Papers that mentioned: 1

Very Likely Science (75)

cran: dotenv

Load Environment Variables from '.env'
Papers that mentioned: 1

Very Likely Science (75)

cran: joineRML

Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes
Papers that mentioned: 1

Very Likely Science (100)

cran: msgl

Multinomial Sparse Group Lasso
Papers that mentioned: 1

Very Likely Science (95)

cran: jocre

Joint Confidence Regions
Papers that mentioned: 1

Very Likely Science (100)

cran: clock

Date-Time Types and Tools
Papers that mentioned: 1

Very Likely Science (83)

pypi: mitocyto

Image analysis of cells in serial sections
Papers that mentioned: 1

Very Likely Science (90)

pypi: reasoner

Reasoner common components
Papers that mentioned: 1

Very Likely Science (80)

pypi: Fluence

Pytorch based deep learning library focussed on providing computationally efficient low resource methods and algorithms for NLP
Papers that mentioned: 1

Very Likely Science (100)

cran: GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base
Papers that mentioned: 1

Very Likely Science (85)

cran: clampSeg

Idealisation of Patch Clamp Recordings
Papers that mentioned: 1

Very Likely Science (83)

cran: CliquePercolation

Clique Percolation for Networks
Papers that mentioned: 1

Very Likely Science (85)

pypi: Aadhar

Python Library to validate and generate aadhar numbers
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: girafe

Genome Intervals and Read Alignments for Functional Exploration
Papers that mentioned: 1

Very Likely Science (90)

pypi: barcode

Design and test NGS barcodes.
Papers that mentioned: 1

Very Likely Science (80)

pypi: apap

Declarative and handy RESTful client factory
Papers that mentioned: 1

Very Likely Science (65)

pypi: 3to2

Refactors valid 3.x syntax into valid 2.x syntax, if a syntactical conversion is possible
Papers that mentioned: 1

Very Likely Science (65)

cran: GNRS

Access the 'Geographic Name Resolution Service'
Papers that mentioned: 1

Very Likely Science (75)

pypi: astrolabe

Timer library for recording performance metrics.
Papers that mentioned: 1

Very Likely Science (65)

pypi: pas

Secure password manager..
Papers that mentioned: 1

Very Likely Science (65)

pypi: arithmetic

Arithmetic module
Papers that mentioned: 1

Very Likely Science (65)

cran: GmAMisc

'Gianmarco Alberti' Miscellaneous
Papers that mentioned: 1

Very Likely Science (75)

pypi: 3DCORE

3D Coronal Rope Ejection Model
Papers that mentioned: 1

Very Likely Science (100)

cran: GMDH

Short Term Forecasting via GMDH-Type Neural Network Algorithms
Papers that mentioned: 1

Very Likely Science (93)