Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

cran: FuzzyQ

Fuzzy Quantification of Common and Rare Species
Papers that mentioned: 1

Very Likely Science (89)

pypi: mdtest

Framework for running tests embedded in markdown files.
Papers that mentioned: 1

Very Likely Science (65)

cran: fullfact

Full Factorial Breeding Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: biggest

A utility for finding the biggest files and/or directories in a directory tree
Papers that mentioned: 1

Likely Science (40)

pypi: bigbrain

A toolbox for learning anything and everything from data.
Papers that mentioned: 1

Very Likely Science (100)

cran: RGF

Regularized Greedy Forest
Papers that mentioned: 1

Very Likely Science (66)

pypi: Brainy

brainfuck interpreter
Papers that mentioned: 1

Likely Science (40)

pypi: aerpy

a python library for reading ".aedat" format for event-camera logs.
Papers that mentioned: 1

Likely Science (55)

pypi: BiEntropy

High-performance implementations of BiEntropy metrics proposed by Grenville J. Croll
Papers that mentioned: 1

Very Likely Science (100)

pypi: carp

Code templating scripts
Papers that mentioned: 1

Very Likely Science (65)

pypi: brange

A range which automatically deals with either direction.
Papers that mentioned: 1

Very Likely Science (65)

pypi: candis

A data mining suite for DNA Microarrays.
Papers that mentioned: 1

Very Likely Science (90)

pypi: career

The very basic to start some elearning activity
Papers that mentioned: 1

Very Likely Science (65)

pypi: cando

Python USB-CAN(Cando & Cando_pro) access module
Papers that mentioned: 1

Very Likely Science (65)

cran: permubiome

A Permutation Based Test for Biomarker Discovery in Microbiome Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: reflect

Reflect Python bindings
Papers that mentioned: 1

Very Likely Science (80)

pypi: aha

aha is a web application framework specialized for Google App Engine.
Papers that mentioned: 1

Likely Science (40)

cran: fluxweb

Estimate Energy Fluxes in Food Webs
Papers that mentioned: 1

Very Likely Science (75)

pypi: yamm

yet another markov module
Papers that mentioned: 1

Very Likely Science (85)

pypi: zmq

You are probably looking for pyzmq.
Papers that mentioned: 1

Very Likely Science (100)

cran: SuperRanker

Sequential Rank Agreement
Papers that mentioned: 1

Very Likely Science (75)

pypi: presence

Presence
Papers that mentioned: 1

Very Likely Science (65)

pypi: CMash

Fast and accurate set similarity estimation via containment min hash (for genomic datasets).
Papers that mentioned: 1

Very Likely Science (100)

cran: binomialRF

Binomial Random Forest Feature Selection
Papers that mentioned: 1

Very Likely Science (83)

cran: bipartiteD3

Interactive Bipartite Graphs
Papers that mentioned: 1

Very Likely Science (75)

cran: binGroup2

Identification and Estimation using Group Testing
Papers that mentioned: 1

Very Likely Science (88)

cran: biocompute

Create and Manipulate BioCompute Objects
Papers that mentioned: 1

Very Likely Science (81)

cran: landest

Landmark Estimation of Survival and Treatment Effect
Papers that mentioned: 1

Very Likely Science (83)

pypi: gthread

Papers that mentioned: 1

Likely Science (40)

pypi: MLibrary

Machine Learning Algorithms Library with Numpy & pure python
Papers that mentioned: 1

Very Likely Science (75)

cran: BioPETsurv

Biomarker Prognostic Enrichment Tool for Time-to-Event Trial
Papers that mentioned: 1

Very Likely Science (93)

cran: bvartools

Bayesian Inference of Vector Autoregressive and Error Correction Models
Papers that mentioned: 1

Very Likely Science (100)

cran: bvpSolve

Solvers for Boundary Value Problems of Differential Equations
Papers that mentioned: 1

Very Likely Science (85)

pypi: Savoir

A python wrapper for Multichain Json-RPC API
Papers that mentioned: 1

Likely Science (40)

cran: biscale

Tools and Palettes for Bivariate Thematic Mapping
Papers that mentioned: 1

Very Likely Science (100)

pypi: guix

Make faster cross platform GUI
Papers that mentioned: 1

Very Likely Science (65)

cran: blastula

Easily Send HTML Email Messages
Papers that mentioned: 1

Very Likely Science (83)

cran: landscapetools

Landscape Utility Toolbox
Papers that mentioned: 1

Very Likely Science (88)

cran: landsepi

Landscape Epidemiology and Evolution
Papers that mentioned: 1

Very Likely Science (85)

cran: wqs

Weighted Quantile Sum Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: bolasso

Model Consistent Lasso Estimation Through the Bootstrap
Papers that mentioned: 1

Likely Science (50)

cran: blm

Binomial Linear Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: blob

A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
Papers that mentioned: 1

Very Likely Science (75)

pypi: cnorm

CNORM a C Front-end in Python
Papers that mentioned: 1

Very Likely Science (85)

cran: latte

Interface to 'LattE' and '4ti2'
Papers that mentioned: 1

Very Likely Science (81)

cran: bnspatial

Spatial Implementation of Bayesian Networks and Mapping
Papers that mentioned: 1

Very Likely Science (89)

cran: embed

Extra Recipes for Encoding Predictors
Papers that mentioned: 1

Very Likely Science (100)

pypi: helios

Python library to work with complex networks
Papers that mentioned: 1

Likely Science (50)

pypi: heuristic

Optimization package with wide flexibility for logical understanding
Papers that mentioned: 1

Very Likely Science (90)

cran: bpnreg

Bayesian Projected Normal Regression Models for Circular Data
Papers that mentioned: 1

Very Likely Science (89)

bioconductor: ODER

Optimising the Definition of Expressed Regions
Papers that mentioned: 1

Very Likely Science (100)

pypi: saxpy

SAX, HOTSAX, EMMA implementations for Python
Papers that mentioned: 1

Very Likely Science (71)

pypi: hippie

Papers that mentioned: 1

Very Likely Science (65)

pypi: HireFire

A Python lib to integrate with the HireFire service -- The Heroku Proccess Manager
Papers that mentioned: 1

Very Likely Science (65)

cran: buildr

Organize & Run Build Scripts Comfortably
Papers that mentioned: 1

Very Likely Science (75)

pypi: CoAPthon3

CoAPthon is a python library to the CoAP protocol.
Papers that mentioned: 1

Very Likely Science (65)

pypi: HOGPROP

Papers that mentioned: 1

Very Likely Science (80)

cran: canprot

Chemical Metrics of Differentially Expressed Proteins
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: OTUbase

Provides structure and functions for the analysis of OTU data
Papers that mentioned: 1

Very Likely Science (100)

cran: RTransferEntropy

Measuring Information Flow Between Time Series with Shannon and Renyi Transfer Entropy
Papers that mentioned: 1

Very Likely Science (91)

cran: censusapi

Retrieve Data from the Census APIs
Papers that mentioned: 1

Very Likely Science (77)

pypi: SBMLLint

Linter for SBML models.
Papers that mentioned: 1

Very Likely Science (100)

cran: censys

Tools to Query the 'Censys' API
Papers that mentioned: 1

Very Likely Science (75)

cran: learnPopGen

Population Genetic Simulations & Numerical Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: am

Develop soon
Papers that mentioned: 1

Very Likely Science (65)

cran: cit

Causal Inference Test
Papers that mentioned: 1

Very Likely Science (100)

cran: cleaner

Fast and Easy Data Cleaning
Papers that mentioned: 1

Very Likely Science (70)

pypi: coder

A graphical interface tool, integrated web encoding/decoding method, hash method and the ASCII table.
Papers that mentioned: 1

Very Likely Science (65)

cran: semTable

Structural Equation Modeling Tables
Papers that mentioned: 1

Very Likely Science (93)

cran: sensitivitymv

Sensitivity Analysis in Observational Studies
Papers that mentioned: 1

Very Likely Science (93)

pypi: MMSICHE

Library that implements MMSICHE algorithm
Papers that mentioned: 1

Very Likely Science (75)

pypi: mmpdb

A package to identify matched molecular pairs and use them to predict property changes
Papers that mentioned: 1

Very Likely Science (90)

cran: bwimage

Describe Image Patterns in Natural Structures
Papers that mentioned: 1

Very Likely Science (75)

cran: condformat

Conditional Formatting in Data Frames
Papers that mentioned: 1

Very Likely Science (97)

cran: lift

Compute the Top Decile Lift and Plot the Lift Curve
Papers that mentioned: 1

Very Likely Science (75)

pypi: mnist

Python utilities to download and parse the MNIST dataset
Papers that mentioned: 1

Very Likely Science (80)

cran: CovCombR

Combine Partial Covariance / Relationship Matrices
Papers that mentioned: 1

Very Likely Science (85)

pypi: optimum

Optimum Library is an extension of the Hugging Face Transformers library, providing a framework to integrate third-party libraries from Hardware Partners and interface with their specific functionality.
Papers that mentioned: 1

Very Likely Science (100)

pypi: optimtool

The fundamental package for scientific research in optimization.
Papers that mentioned: 1

Very Likely Science (100)

cran: crch

Censored Regression with Conditional Heteroscedasticity
Papers that mentioned: 1

Very Likely Science (85)

cran: linkprediction

Link Prediction Methods
Papers that mentioned: 1

Very Likely Science (100)

cran: SimRVPedigree

Simulate Pedigrees Ascertained for a Rare Disease
Papers that mentioned: 1

Very Likely Science (75)

pypi: MoCV

List and details of Computer Vision algorithms
Papers that mentioned: 1

Very Likely Science (75)

pypi: iget

A small CLI
Papers that mentioned: 1

Very Likely Science (65)

pypi: colab

Collaboration platform for communities
Papers that mentioned: 1

Very Likely Science (100)

pypi: collage

Creates collages of miniature images that resemble the originals.
Papers that mentioned: 1

Very Likely Science (65)

cran: ccChooser

Developing a core collections
Papers that mentioned: 1

Very Likely Science (75)

pypi: emacs

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: dhga

Differential Hub Gene Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: plotGrouper

Shiny app GUI wrapper for ggplot with built-in statistical analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: runstats

Fast Computation of Running Statistics for Time Series
Papers that mentioned: 1

Very Likely Science (100)

cran: Runuran

R Interface to the 'UNU.RAN' Random Variate Generators
Papers that mentioned: 1

Very Likely Science (83)

pypi: colorcet

Collection of perceptually uniform colormaps
Papers that mentioned: 1

Very Likely Science (71)

pypi: colorednoise

Generate Gaussian (1/f)**beta noise (e.g. pink noise)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: proBAMr

Generating SAM file for PSMs in shotgun proteomics data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: qcmetrics

A Framework for Quality Control
Papers that mentioned: 1

Very Likely Science (100)

pypi: modus

A simple modeling python lib
Papers that mentioned: 1

Very Likely Science (65)

cran: xbreed

Genomic Simulation of Purebred and Crossbred Populations
Papers that mentioned: 1

Very Likely Science (85)

pypi: impyute

Cross-sectional and time-series data imputation algorithms
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: R3CPET

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Papers that mentioned: 1

Very Likely Science (100)