Packages with Software Mentions in Scientific Papers

Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylation array data. See https://life-epigenetics-methylcheck.readthedocs-hosted.com/en/latest/ for full documentation and examples.
Papers that mentioned: 1

Very Likely Science (100)

cran: ClusterRankTest

Rank Tests for Clustered Data
Papers that mentioned: 1

Very Likely Science (75)

cran: lgr

A Fully Featured Logging Framework
Papers that mentioned: 1

Very Likely Science (79)

pypi: codes

useful code records
Papers that mentioned: 1

Very Likely Science (65)

pypi: mmtf-python

A decoding libary for the PDB mmtf format
Papers that mentioned: 1

Very Likely Science (100)

cran: cobs

Constrained B-Splines (Sparse Matrix Based)
Papers that mentioned: 1

Very Likely Science (75)

cran: cms

Calculate Medicare Reimbursement
Papers that mentioned: 1

Very Likely Science (98)

pypi: idx

Python library used to interact with Homegate or Immoscout24 usind the IDX3.01 API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: cifti

Interface to handle CIFTI files
Papers that mentioned: 1

Very Likely Science (65)

cran: coca

Cluster-of-Clusters Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: codalm

Transformation-Free Linear Regression for Compositional Outcomes and Predictors
Papers that mentioned: 1

Very Likely Science (93)

pypi: oem

Python Orbit Ephemeris Message (OEM) tools
Papers that mentioned: 1

Very Likely Science (85)

cran: CoFRA

Complete Functional Regulation Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: ocr

Single Character OCR
Papers that mentioned: 1

Very Likely Science (65)

cran: sets

Sets, Generalized Sets, Customizable Sets and Intervals
Papers that mentioned: 1

Very Likely Science (75)

pypi: conan

Conan C/C++ package manager
Papers that mentioned: 1

Very Likely Science (85)

pypi: mnd

Match python args and dispatch based on their contents.
Papers that mentioned: 1

Very Likely Science (65)

cran: colorednoise

Simulate Temporally Autocorrelated Populations
Papers that mentioned: 1

Very Likely Science (100)

pypi: implicit

Collaborative Filtering for Implicit Feedback Datasets
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: FunChIP

Clustering and Alignment of ChIP-Seq peaks based on their shapes
Papers that mentioned: 1

Very Likely Science (90)

cran: comparator

Comparison Functions for Clustering and Record Linkage
Papers that mentioned: 1

Very Likely Science (75)

pypi: imio

Loading and saving of image data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: typer

Typer, build great CLIs. Easy to code. Based on Python type hints.
Papers that mentioned: 1

Very Likely Science (65)

pypi: mngr

Nothing
Papers that mentioned: 1

Very Likely Science (65)

cran: Compositional

Compositional Data Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: typeform

Python Client wrapper for Typeform API
Papers that mentioned: 1

Very Likely Science (65)

cran: lifecycle

Manage the Life Cycle of your Package Functions
Papers that mentioned: 1

Very Likely Science (87)

pypi: cogito

A tiny python library that links against libcogito
Papers that mentioned: 1

Very Likely Science (65)

pypi: swirl

Some sugar for asynchronous Tornado code
Papers that mentioned: 1

Likely Science (40)

pypi: scaden

Cell type deconvolution using single cell data
Papers that mentioned: 1

Very Likely Science (100)

pypi: TWP

tweet with picture
Papers that mentioned: 1

Very Likely Science (65)

cran: confinterpret

Descriptive Interpretations of Confidence Intervals
Papers that mentioned: 1

Very Likely Science (72)

cran: conflicted

An Alternative Conflict Resolution Strategy
Papers that mentioned: 1

Very Likely Science (87)

pypi: coil

A user-friendly CMS frontend for Nikola.
Papers that mentioned: 1

Likely Science (40)

pypi: NodeEngine

Tkinter Game Engine
Papers that mentioned: 1

Likely Science (40)

cran: copBasic

General Bivariate Copula Theory and Many Utility Functions
Papers that mentioned: 1

Likely Science (58)

pypi: nmslib

Non-Metric Space Library (NMSLIB)
Papers that mentioned: 1

Very Likely Science (83)

pypi: palmer

Redice Flask Boost Library. Inspired by flask-api.
Papers that mentioned: 1

Very Likely Science (65)

cran: shipunov

Miscellaneous Functions from Alexey Shipunov
Papers that mentioned: 1

Very Likely Science (75)

pypi: condenser

A fast interface between SQLAlchemy and Numpy
Papers that mentioned: 1

Very Likely Science (65)

cran: corpus

Text Corpus Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: CorrectOverloadedPeaks

Correct Overloaded Peaks from GC-APCI-MS Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: netneurotools

Commonly used tools in the Network Neuroscience Lab
Papers that mentioned: 1

Very Likely Science (100)

pypi: medicine

awsome project created by pycman.
Papers that mentioned: 1

Very Likely Science (65)

pypi: nbib

PubMed nbib citation format parser
Papers that mentioned: 1

Very Likely Science (85)

pypi: optimix

Abstract function optimisation
Papers that mentioned: 1

Very Likely Science (65)

pypi: natusfera

Papers that mentioned: 1

Unlikely Science (0)

cran: CovCombR

Combine Partial Covariance / Relationship Matrices
Papers that mentioned: 1

Very Likely Science (85)

pypi: optimum

Optimum Library is an extension of the Hugging Face Transformers library, providing a framework to integrate third-party libraries from Hardware Partners and interface with their specific functionality.
Papers that mentioned: 1

Very Likely Science (100)

pypi: optimtool

The fundamental package for scientific research in optimization.
Papers that mentioned: 1

Very Likely Science (100)

cran: VecStatGraphs3D

Vector analysis using graphical and analytical methods in 3D
Papers that mentioned: 1

Very Likely Science (85)

cran: coxed

Duration-Based Quantities of Interest for the Cox Proportional Hazards Model
Papers that mentioned: 1

Very Likely Science (100)

cran: urca

Unit Root and Cointegration Tests for Time Series Data
Papers that mentioned: 1

Very Likely Science (75)

cran: LinkedMatrix

Column-Linked and Row-Linked Matrices
Papers that mentioned: 1

Very Likely Science (77)

pypi: jsc

Jumpstarter Console
Papers that mentioned: 1

Very Likely Science (65)

cran: cpk

Clinical Pharmacokinetics
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: CellScore

Tool for Evaluation of Cell Identity from Transcription Profiles
Papers that mentioned: 1

Very Likely Science (90)

pypi: mobi

unpack unencrypted mobi files
Papers that mentioned: 1

Very Likely Science (80)

cran: crch

Censored Regression with Conditional Heteroscedasticity
Papers that mentioned: 1

Very Likely Science (85)

cran: linkprediction

Link Prediction Methods
Papers that mentioned: 1

Very Likely Science (100)

cran: SimRVPedigree

Simulate Pedigrees Ascertained for a Rare Disease
Papers that mentioned: 1

Very Likely Science (75)

cran: crispRdesignR

Guide Sequence Design for CRISPR/Cas9
Papers that mentioned: 1

Very Likely Science (89)

cran: crop

Graphics Cropping Tool
Papers that mentioned: 1

Very Likely Science (85)

cran: linpk

Generate Concentration-Time Profiles from Linear PK Systems
Papers that mentioned: 1

Very Likely Science (75)

pypi: SuperGLU

Base Generalized Learning Utilities (GLU) library for communicating data between different learning technologies and intelligent systems.
Papers that mentioned: 1

Very Likely Science (100)

pypi: CoilMQ

Simple, lightweight, and easily extensible STOMP message broker.
Papers that mentioned: 1

Likely Science (55)

cran: StrainRanking

Ranking of Pathogen Strains
Papers that mentioned: 1

Very Likely Science (75)

pypi: lzip

Lzip (.lz) archives compression and decompression with buffers and URLs support
Papers that mentioned: 1

Very Likely Science (100)

cran: catIrt

Simulate IRT-Based Computerized Adaptive Tests
Papers that mentioned: 1

Very Likely Science (97)

pypi: robo-gym

robo-gym: an open source toolkit for Distributed Deep Reinforcement Learning on real and simulated robots.
Papers that mentioned: 1

Very Likely Science (100)

cran: PedCNV

An implementation for association analysis with CNV data
Papers that mentioned: 1

Very Likely Science (85)

pypi: Ibidas

Ibidas is an environment for data handling and exploration, able to cope with different data structures and sources
Papers that mentioned: 1

Very Likely Science (65)

pypi: identifier

A utility for identifier
Papers that mentioned: 1

Likely Science (40)

cran: ctrlGene

Assess the Stability of Candidate Housekeeping Genes
Papers that mentioned: 1

Very Likely Science (75)

cran: designmatch

Matched Samples that are Balanced and Representative by Design
Papers that mentioned: 1

Very Likely Science (83)

pypi: MoCV

List and details of Computer Vision algorithms
Papers that mentioned: 1

Very Likely Science (75)

pypi: iget

A small CLI
Papers that mentioned: 1

Very Likely Science (65)

pypi: metapy

Python bindings for MeTA
Papers that mentioned: 1

Very Likely Science (100)

cran: lmDiallel

Linear Fixed/Mixed Effects Models for Diallel Crosses
Papers that mentioned: 1

Very Likely Science (85)

pypi: launch

Launch: An Application Launcher
Papers that mentioned: 1

Very Likely Science (65)

pypi: macroecotools

Tools for conducting macroecological analyses
Papers that mentioned: 1

Very Likely Science (100)

cran: regnet

Network-Based Regularization for Generalized Linear Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: durian

Webhooks for Django **EXPERIMENTAL**
Papers that mentioned: 1

Very Likely Science (75)

pypi: iran

Python for iran.
Papers that mentioned: 1

Very Likely Science (65)

pypi: lara

Lara - A web framework in python (you can create your own ;))
Papers that mentioned: 1

Very Likely Science (65)

pypi: transformations

Homogeneous Transformation Matrices and Quaternions
Papers that mentioned: 1

Very Likely Science (100)