pypi: cuttlery
Codon Usage Table Tools-lery.
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cran: gfpop
Graph-Constrained Functional Pruning Optimal Partitioning
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cran: ggallin
Grab Bag of 'ggplot2' Functions
Papers that mentioned: 1
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pypi: hyperspectral
A frugal python package with some hyperspectral data goodies.
Papers that mentioned: 1
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pypi: scorecard
PMML Scorecard generator
Papers that mentioned: 1
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pypi: msmbuilder
MSMBuilder: Statistical models for Biomolecular Dynamics
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bioconductor: dks
The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.
Papers that mentioned: 1
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cran: ggpol
Visualizing Social Science Data with 'ggplot2'
Papers that mentioned: 1
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bioconductor: EmpiricalBrownsMethod
Uses Brown's method to combine p-values from dependent tests
Papers that mentioned: 1
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pypi: GRADitude
A tool for the analysis of GRAD-seq data
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cran: ggroups
Pedigree and Genetic Groups
Papers that mentioned: 1
Very Likely Science (99)
bioconductor: flagme
Analysis of Metabolomics GC/MS Data
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pypi: cwt
A Python implementation of CWT/COSE.
Papers that mentioned: 1
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pypi: cx
Compute nearest neighbor distances along the coast with a view angle.
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pypi: cy
Modelling CRISPR dropout data
Papers that mentioned: 1
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pypi: grammar
Python library for natural language processing
Papers that mentioned: 1
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pypi: cyclops
cyclops is a high-performance gateway for sentry.
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pypi: Cylon
XMPP bot
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pypi: scorecardpy
Credit Risk Scorecard
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pypi: Cyrus
Papers that mentioned: 1
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pypi: cytoflow
Python tools for quantitative, reproducible flow cytometry analysis
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cran: GMCM
Fast Estimation of Gaussian Mixture Copula Models
Papers that mentioned: 1
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cran: gnomonicM
Estimate Natural Mortality for Different Life Stages
Papers that mentioned: 1
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bioconductor: GNET2
Constructing gene regulatory networks from expression data through functional module inference
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pypi: d2
CLI to get API JSON data and show as table
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cran: HCD
Hierarchical Community Detection by Recursive Partitioning
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cran: igraphdata
A Collection of Network Data Sets for the 'igraph' Package
Papers that mentioned: 1
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pypi: daily
Simple CLI tool to write on the #daily slack channel and its corresponding timesheet.
Papers that mentioned: 1
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cran: HeritSeq
Heritability of Gene Expression for Next-Generation Sequencing
Papers that mentioned: 1
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bioconductor: LinkHD
LinkHD: a versatile framework to explore and integrate heterogeneous data
Papers that mentioned: 1
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pypi: grapheme
Unicode grapheme helpers
Papers that mentioned: 1
Very Likely Science (65)
pypi: dan
Data analyzer.
Papers that mentioned: 1
Very Likely Science (65)
pypi: GraphHierarchy
A module calculating quantities related to a network metric known as trophic coherence but now generalised to all networks, see Moutsinas, G., Shuaib, C., Guo, W., & Jarvis, S. (2019). Graph hierarchy and spread of infections. arXiv preprint arXiv:1908.04358 for more details.
Papers that mentioned: 1
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pypi: dap
DAP (Data Access Protocol) client and server for Python.
Papers that mentioned: 1
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pypi: Darbe
RDS MySQL replication setup tool
Papers that mentioned: 1
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pypi: Darc
Darc is an archiving system for use in media projects that allows developers to contain and use their data files from .darc files that store data in a bz2 compressed and AES encrypted (optional) format.
Papers that mentioned: 1
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cran: iDOVE
Durability of Vaccine Efficacy Against SARS-CoV-2 Infection
Papers that mentioned: 1
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cran: IgAScores
Score Taxon-Level IgA Binding in IgA-Seq Experiments
Papers that mentioned: 1
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cran: imguR
An Imgur.com API Client Package
Papers that mentioned: 1
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cran: IMIX
Gaussian Mixture Model for Multi-Omics Data Integration
Papers that mentioned: 1
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pypi: darn
Easy remote and local code execution
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pypi: dart
Turn URL variables into models.
Papers that mentioned: 1
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bioconductor: mAPKL
A Hybrid Feature Selection method for gene expression data
Papers that mentioned: 1
Very Likely Science (100)
cran: intsvy
International Assessment Data Manager
Papers that mentioned: 1
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cran: InvariantCausalPrediction
Invariant Causal Prediction
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cran: sigr
Succinct and Correct Statistical Summaries for Reports
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cran: iqLearn
Interactive Q-Learning
Papers that mentioned: 1
Very Likely Science (75)
pypi: epistasis
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
Papers that mentioned: 1
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pypi: EpiTator
Annotators for extracting epidemiological information from text.
Papers that mentioned: 1
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bioconductor: miQC
Flexible, probabilistic metrics for quality control of scRNA-seq data
Papers that mentioned: 1
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bioconductor: seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
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pypi: DataLine
Simple class to aid the process of data cleaning.
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cran: JWileymisc
Miscellaneous Utilities and Functions
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pypi: graphs
A library for graph-based machine learning.
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pypi: datasketch
Probabilistic data structures for processing and searching very large datasets
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pypi: datavis
Visualization tools for Scientific Data analysis (e.g Images and Tables)
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pypi: mtable
format data to reStructedText and Markup Table
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pypi: datawig
Imputation for tables with missing values
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bioconductor: optimalFlow
optimalFlow
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cran: LCF
Linear Combination Fitting
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pypi: mtest
Two-sample test based on model selection and with better performance than the t-test on small sample sizes.
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cran: lm.br
Linear Model with Breakpoint
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pypi: db3
Python 3 client for SSDB
Papers that mentioned: 1
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bioconductor: Rtpca
Thermal proximity co-aggregation with R
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pypi: grappa
Behavior-oriented, expressive, developer-friendly assertions library
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cran: SMME
Soft Maximin Estimation for Large Scale Heterogeneous Data
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bioconductor: scDataviz
scDataviz: single cell dataviz and downstream analyses
Papers that mentioned: 1
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pypi: grass
Annotation of de novo assemblies using semi-supervised learning on graphs
Papers that mentioned: 1
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bioconductor: sevenC
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
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pypi: dbp
Simple program to manage gbp-docker container lifecycle.
Papers that mentioned: 1
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cran: LocFDRPois
Functions for Performing Local FDR Estimation when Null and Alternative are Poisson
Papers that mentioned: 1
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cran: loop
loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
Papers that mentioned: 1
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pypi: GraviPy
Tensor Calculus Package for General Relativity
Papers that mentioned: 1
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pypi: ros
Ros Knowledge Network
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cran: maptpx
MAP Estimation of Topic Models
Papers that mentioned: 1
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cran: mcca
Multi-Category Classification Accuracy
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pypi: dcat
Data Cataloging Service
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pypi: dcm2bids
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
Papers that mentioned: 1
Very Likely Science (100)
pypi: dcmrtstruct2nii
Convert DICOM RT-Struct to nii
Papers that mentioned: 1
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pypi: ddb
A serviceless sql interface for flat files written in cython
Papers that mentioned: 1
Very Likely Science (65)
pypi: abacus
Helper Library for Tornado Web Framework
Papers that mentioned: 1
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pypi: ddpg
Tensorflow implimentation of the DDPG algorithm
Papers that mentioned: 1
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pypi: acf
Lightweight recommender engine
Papers that mentioned: 1
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pypi: acquire
A tool to quickly gather forensic artifacts from disk images or a live system into a lightweight container
Papers that mentioned: 1
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pypi: alfpy
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).
Papers that mentioned: 1
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pypi: ag
AlgoLib Project
Papers that mentioned: 1
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pypi: adw
appdirs wrapper library
Papers that mentioned: 1
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pypi: aedat
A fast AEDAT4 decoder with an underlying Rust implementation
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pypi: decode
DESHIMA code for data analysis
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cran: MIDN
Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions
Papers that mentioned: 1
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cran: MicroMacroMultilevel
Micro-Macro Multilevel Modeling
Papers that mentioned: 1
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pypi: alone
Metaclass that defines a class as a singleton
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cran: miselect
Variable Selection for Multiply Imputed Data
Papers that mentioned: 1
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pypi: ambient
A package for building engineering physics
Papers that mentioned: 1
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pypi: griddata
Grid data library for Autodock and OpenDX format files
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pypi: decora
Python API for controlling Decora dimmer switches
Papers that mentioned: 1
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pypi: decoy
Opinionated mocking library for Python
Papers that mentioned: 1
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cran: monographaR
Taxonomic Monographs Tools
Papers that mentioned: 1
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cran: MonoPhy
Explore Monophyly of Taxonomic Groups in a Phylogeny
Papers that mentioned: 1
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cran: morse
Modelling Reproduction and Survival Data in Ecotoxicology
Papers that mentioned: 1
Very Likely Science (85)