Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

bioconductor: cellscape

Explores single cell copy number profiles in the context of a single cell tree
Papers that mentioned: 1

Very Likely Science (90)

pypi: abf

Abstract Binary Format manipulation : elf pe mach-o
Papers that mentioned: 1

Very Likely Science (65)

pypi: fitparse

Python library to parse ANT/Garmin .FIT files
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: h5vc

Managing alignment tallies using a hdf5 backend
Papers that mentioned: 1

Very Likely Science (75)

pypi: Ammonia

task queue
Papers that mentioned: 1

Very Likely Science (65)

cran: elasso

Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
Papers that mentioned: 1

Very Likely Science (60)

cran: edina

Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model
Papers that mentioned: 1

Very Likely Science (100)

cran: easyreg

Easy Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: dynamac

Dynamic Simulation and Testing for Single-Equation ARDL Models
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: HiCBricks

Framework for Storing and Accessing Hi-C Data Through HDF Files
Papers that mentioned: 1

Very Likely Science (65)

pypi: pdf2jpg

Wrapper to convert PDF files into jpg
Papers that mentioned: 1

Likely Science (40)

bioconductor: lpNet

Linear Programming Model for Network Inference
Papers that mentioned: 1

Very Likely Science (100)

pypi: atp

An adaptive thread pool implementation
Papers that mentioned: 1

Likely Science (40)

pypi: fitted

Machine learning tools
Papers that mentioned: 1

Very Likely Science (90)

pypi: engal

Simple photo gallery
Papers that mentioned: 1

Very Likely Science (65)

cran: gRapfa

Acyclic Probabilistic Finite Automata
Papers that mentioned: 1

Very Likely Science (75)

pypi: rec

a collection of some useful regular expressions.
Papers that mentioned: 1

Very Likely Science (75)

pypi: mkl

Intel® oneAPI Math Kernel Library
Papers that mentioned: 1

Very Likely Science (80)

cran: tribe

Play with the Tribe of Attributes
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: epivizr

R Interface to epiviz web app
Papers that mentioned: 1

Very Likely Science (90)

cran: GREMLINS

Generalized Multipartite Networks
Papers that mentioned: 1

Very Likely Science (93)

pypi: about

Software Metadata for Humans
Papers that mentioned: 1

Very Likely Science (65)

cran: mvnfast

Fast Multivariate Normal and Student's t Methods
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: hyperdraw

Visualizing Hypergaphs
Papers that mentioned: 1

Very Likely Science (98)

bioconductor: hypergraph

A package providing hypergraph data structures
Papers that mentioned: 1

Very Likely Science (90)

pypi: abp

Port of C++ due to Simon Anders and Hans J Briegel
Papers that mentioned: 1

Very Likely Science (67)

bioconductor: Icens

NPMLE for Censored and Truncated Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: attune

Tools for tuning optical parametric amplifiers and multidimensional spectrometers.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: alsace

Papers that mentioned: 1

Unlikely Science (0)

pypi: HTMLParser

Backport of HTMLParser from python 2.7
Papers that mentioned: 1

Very Likely Science (65)

pypi: aud

aud is a python package that aims to make bulk file edits easy enough for anyone with minimal scripting or python knowledge
Papers that mentioned: 1

Very Likely Science (80)

cran: tricolore

A Flexible Color Scale for Ternary Compositions
Papers that mentioned: 1

Very Likely Science (75)

cran: groupedSurv

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function
Papers that mentioned: 1

Very Likely Science (83)

pypi: fizz

fizzbuzz is a python package for acing fizzbuzz questions at coding interviews.
Papers that mentioned: 1

Very Likely Science (65)

pypi: WTForms

Form validation and rendering for Python web development.
Papers that mentioned: 1

Very Likely Science (65)

pypi: smoothie

Python Exception Based Callbacks
Papers that mentioned: 1

Very Likely Science (65)

pypi: acd

Hierarchical interpretatations and contextual decomposition in pytorch
Papers that mentioned: 1

Very Likely Science (100)

pypi: dbf

Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
Papers that mentioned: 1

Very Likely Science (65)

cran: interplot

Plot the Effects of Variables in Interaction Terms
Papers that mentioned: 1

Very Likely Science (100)

cran: interep

Interaction Analysis of Repeated Measure Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: audioread

Multi-library, cross-platform audio decoding.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: iterativeBMAsurv

The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival Analysis
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: IWTomics

Interval-Wise Testing for Omics Data
Papers that mentioned: 1

Very Likely Science (98)

pypi: ach

Library to create and parse ACH files (NACHA)
Papers that mentioned: 1

Very Likely Science (85)

pypi: audition

A small web framework that validates requests and provides an API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: aclust

streaming agglomerative clustering
Papers that mentioned: 1

Very Likely Science (100)

pypi: Flag

Simple flag library for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: splot

Visual analytics for spatial analysis with PySAL.
Papers that mentioned: 1

Very Likely Science (100)

pypi: radula

RadosGW client for Ceph S3 storage
Papers that mentioned: 1

Very Likely Science (80)

cran: GSSE

Genotype-Specific Survival Estimation
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: KinSwingR

KinSwingR: network-based kinase activity prediction
Papers that mentioned: 1

Very Likely Science (100)

pypi: namu

한글 프로그래밍 언어 '나무'를 실행할 수 있는 패키지입니다.
Papers that mentioned: 1

Very Likely Science (65)

cran: gsynth

Generalized Synthetic Control Method
Papers that mentioned: 1

Very Likely Science (83)

pypi: flaimapper

Fragment Location Annotation Identification Mapper
Papers that mentioned: 1

Very Likely Science (95)

pypi: pycrypto

Cryptographic modules for Python.
Papers that mentioned: 1

Very Likely Science (65)

cran: GWASExactHW

Exact Hardy-Weinburg testing for Genome Wide Association Studies
Papers that mentioned: 1

Very Likely Science (83)

pypi: acs

Azure Container Service command line tools
Papers that mentioned: 1

Very Likely Science (65)

cran: define

Papers that mentioned: 1

Unlikely Science (0)

cran: DeclareDesign

Declare and Diagnose Research Designs
Papers that mentioned: 1

Very Likely Science (100)

pypi: indexing

Papers that mentioned: 1

Unlikely Science (0)

pypi: dxf

Python library to generate DXF drawing files (CAD)
Papers that mentioned: 1

Very Likely Science (80)

pypi: flame

Modeling framework for eTRANSAFE project
Papers that mentioned: 1

Very Likely Science (100)

cran: haplotypes

Manipulating DNA Sequences and Estimating Unambiguous Haplotype Network with Statistical Parsimony
Papers that mentioned: 1

Very Likely Science (85)

cran: mvtsplot

Multivariate Time Series Plot
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: LymphoSeq

Analyze high-throughput sequencing of T and B cell receptors
Papers that mentioned: 1

Very Likely Science (75)

cran: HDCI

High Dimensional Confidence Interval Based on Lasso and Bootstrap
Papers that mentioned: 1

Very Likely Science (83)

pypi: action

A command-line parser you won't hate
Papers that mentioned: 1

Very Likely Science (65)

pypi: auk

Micro-package for compiling s-expressions into Python's predicate functions
Papers that mentioned: 1

Very Likely Science (75)

cran: healthcareai

Tools for Healthcare Machine Learning
Papers that mentioned: 1

Very Likely Science (85)

pypi: recliner

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: mlep

Interact with an EnergyPlus simulation during runtime using the BCVTB protocol.
Papers that mentioned: 1

Very Likely Science (75)

cran: heritability

Marker-Based Estimation of Heritability Using Individual Plant or Plot Data
Papers that mentioned: 1

Very Likely Science (75)

cran: HextractoR

Integrated Tool for Hairping Extraction of RNA Sequences
Papers that mentioned: 1

Very Likely Science (83)

cran: hhh4contacts

Age-Structured Spatio-Temporal Models for Infectious Disease Counts
Papers that mentioned: 1

Very Likely Science (75)

pypi: aureus

a simple python web framework
Papers that mentioned: 1

Very Likely Science (85)

cran: TDCor

Gene Network Inference from Time-Series Transcriptomic Data
Papers that mentioned: 1

Very Likely Science (85)

cran: shinyFeedback

Display User Feedback in Shiny Apps
Papers that mentioned: 1

Very Likely Science (75)

pypi: ACU

Automatically update AWS credentials file.
Papers that mentioned: 1

Very Likely Science (65)

cran: nat.templatebrains

NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
Papers that mentioned: 1

Very Likely Science (75)

cran: hierarchicalSets

Set Data Visualization Using Hierarchies
Papers that mentioned: 1

Very Likely Science (85)

cran: HierDpart

Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: iasva

Iteratively Adjusted Surrogate Variable Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: AnDE

Papers that mentioned: 1

Unlikely Science (0)

cran: HIV.LifeTables

HIV calibrated model life tables for countries with generalized HIV epidemics
Papers that mentioned: 1

Very Likely Science (75)

cran: HLSM

Hierarchical Latent Space Network Model
Papers that mentioned: 1

Very Likely Science (93)

cran: na.tools

Comprehensive Library for Working with Missing (NA) Values in Vectors
Papers that mentioned: 1

Very Likely Science (90)

cran: codep

Multiscale Codependence Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: mhsmm

Inference for Hidden Markov and Semi-Markov Models
Papers that mentioned: 1

Very Likely Science (75)

cran: hoardeR

Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
Papers that mentioned: 1

Very Likely Science (75)

cran: hornpa

Horn's (1965) Test to Determine the Number of Components/Factors
Papers that mentioned: 1

Very Likely Science (83)

pypi: aurora

Processing Codes for Magnetotelluric Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: easygui

EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
Papers that mentioned: 1

Very Likely Science (100)

cran: simstudy

Simulation of Study Data
Papers that mentioned: 1

Very Likely Science (95)

cran: bife

Binary Choice Models with Fixed Effects
Papers that mentioned: 1

Very Likely Science (77)

cran: CATkit

Papers that mentioned: 1

Unlikely Science (0)

pypi: AdaptivePELE

Enhanced sampling of molecular simulations
Papers that mentioned: 1

Very Likely Science (100)

pypi: recode

Tools to make codecs for time-series serialization and deserialization.
Papers that mentioned: 1

Very Likely Science (65)

cran: catalog

Access the 'Spark Catalog' API via 'sparklyr'
Papers that mentioned: 1

Very Likely Science (77)

pypi: pruner

A CLI tool for pruning your overgrown requirements file
Papers that mentioned: 1

Very Likely Science (65)

pypi: flare

Data Science Project Builder.
Papers that mentioned: 1

Very Likely Science (75)