Packages with Software Mentions in Scientific Papers

cran: scLink

Inferring Functional Gene Co-Expression Networks from Single Cell Data
Papers that mentioned: 1

Very Likely Science (93)

cran: rangeMapper

A Platform for the Study of Macro-Ecology of Life History Traits
Papers that mentioned: 1

Very Likely Science (100)

pypi: SeqFindr

A tool to easily create informative genomic feature plots
Papers that mentioned: 1

Very Likely Science (100)

cran: scorecard

Credit Risk Scorecard
Papers that mentioned: 1

Very Likely Science (75)

cran: rare

Linear Model with Tree-Based Lasso Regularization for Rare Features
Papers that mentioned: 1

Very Likely Science (100)

pypi: dplot

Plots Gromacs SAXS, Pepsi-SAXS, Crysol and Debyer SWAXS intensity curves
Papers that mentioned: 1

Very Likely Science (65)

cran: rasterdiv

Diversity Indices for Numerical Matrices
Papers that mentioned: 1

Very Likely Science (100)

cran: rblt

Bio-Logging Toolbox
Papers that mentioned: 1

Very Likely Science (99)

pypi: pcapy

Python pcap extension
Papers that mentioned: 1

Very Likely Science (65)

pypi: ipecac

Generate Swagger/OAS 3.0 documentation from Python comments
Papers that mentioned: 1

Very Likely Science (65)

cran: rcdd

Computational Geometry
Papers that mentioned: 1

Very Likely Science (100)

pypi: trainer

General purpose model trainer for PyTorch that is more flexible than it should be, by 🐸Coqui.
Papers that mentioned: 1

Very Likely Science (65)

cran: RcppAnnoy

'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors
Papers that mentioned: 1

Very Likely Science (100)

cran: SCtools

Extensions for Synthetic Controls Analysis
Papers that mentioned: 1

Very Likely Science (93)

pypi: guava

Guava - A super lightweight and high performance web framework for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: vega

A Jupyter widget for Vega 5 and Vega-Lite 4
Papers that mentioned: 1

Very Likely Science (95)

pypi: Dogecoin

Papers that mentioned: 1

Very Likely Science (65)

pypi: Distutils

Python Distribution Utilities
Papers that mentioned: 1

Very Likely Science (65)

pypi: NBSVM

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

cran: Rdistance

Distance-Sampling Analyses for Density and Abundance Estimation
Papers that mentioned: 1

Very Likely Science (100)

pypi: vasppy

Python utilities for working with VASP inputs and outputs
Papers that mentioned: 1

Very Likely Science (100)

cran: Rdpack

Update and Manipulate Rd Documentation Objects
Papers that mentioned: 1

Very Likely Science (100)

cran: reactable

Interactive Data Tables for R
Papers that mentioned: 1

Very Likely Science (75)

cran: redlistr

Tools for the IUCN Red List of Ecosystems and Species
Papers that mentioned: 1

Very Likely Science (100)

pypi: dmri-commit

Convex Optimization Modeling for Microstructure Informed Tractography (COMMIT)
Papers that mentioned: 1

Very Likely Science (81)

pypi: digi

Digi driver library
Papers that mentioned: 1

Very Likely Science (65)

pypi: gtsam

Georgia Tech Smoothing And Mapping library
Papers that mentioned: 1

Very Likely Science (80)

pypi: diffgeom

A Python package for symbolic differential geometry
Papers that mentioned: 1

Very Likely Science (75)

pypi: dgtools

An assembler and simulation toolchain for the Digirule2 series of hardware.
Papers that mentioned: 1

Very Likely Science (75)

pypi: NCBImeta

Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
Papers that mentioned: 1

Very Likely Science (75)

pypi: dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way
Papers that mentioned: 1

Very Likely Science (80)

cran: sensR

Thurstonian Models for Sensory Discrimination
Papers that mentioned: 1

Very Likely Science (75)

cran: simplePHENOTYPES

Simulation of Pleiotropic, Linked and Epistatic Phenotypes
Papers that mentioned: 1

Very Likely Science (100)

pypi: ncbi-taxonomist

Toolbox to manage NCBI taxonomical data
Papers that mentioned: 1

Very Likely Science (100)

pypi: DFW

Papers that mentioned: 1

Very Likely Science (65)

pypi: desk

The DESK is an SED-fitting python scripts for fitting data from evolved stars
Papers that mentioned: 1

Very Likely Science (65)

pypi: descriptive

A YAML based, pluggable configuration library inspired by Aeson
Papers that mentioned: 1

Very Likely Science (65)

pypi: hugo

Discord bot library
Papers that mentioned: 1

Very Likely Science (65)

pypi: nd2reader

A tool for reading ND2 files produced by NIS Elements
Papers that mentioned: 1

Very Likely Science (100)

pypi: hyp

Partial JSON API implementation in Python on top of Schematics
Papers that mentioned: 1

Very Likely Science (65)

pypi: DerApproximator

A python module for finite-differences derivatives approximation
Papers that mentioned: 1

Very Likely Science (80)

pypi: multiselect

A Python package for easy storing and manipulating with data coming from a multiselect dropdown menu
Papers that mentioned: 1

Very Likely Science (65)

cran: simcross

Simulate Experimental Crosses
Papers that mentioned: 1

Very Likely Science (100)

pypi: ndlib

Network Diffusion Library
Papers that mentioned: 1

Very Likely Science (100)

pypi: Vase

Async Web framework based on Tulip/asyncio
Papers that mentioned: 1

Very Likely Science (65)

A module calculating quantities related to a network metric known as trophic coherence but now generalised to all networks, see Moutsinas, G., Shuaib, C., Guo, W., & Jarvis, S. (2019). Graph hierarchy and spread of infections. arXiv preprint arXiv:1908.04358 for more details.
Papers that mentioned: 1

Very Likely Science (100)

pypi: GTL

GENERATORE TIPOGRAFICO di LIBERTÀ
Papers that mentioned: 1

Very Likely Science (65)

pypi: deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation.
Papers that mentioned: 1

Very Likely Science (90)

pypi: emo

Terminal emoji.
Papers that mentioned: 1

Very Likely Science (65)

pypi: platereader

Software for counting and quantifying colonies on nutrient plates
Papers that mentioned: 1

Very Likely Science (65)

pypi: ddeint

Scipy-based Delay Differential Equations solver
Papers that mentioned: 1

Very Likely Science (90)

pypi: dcr

Python Package Template
Papers that mentioned: 1

Very Likely Science (65)

pypi: dc

dc, the thing for the thing
Papers that mentioned: 1

Very Likely Science (65)

pypi: dby

Simulations GCB
Papers that mentioned: 1

Very Likely Science (75)

pypi: neoepiscope

comprehensive neoepitope prediction software
Papers that mentioned: 1

Very Likely Science (100)

pypi: neon

colorful cui utility
Papers that mentioned: 1

Likely Science (40)

pypi: nescience

Machine Learning with the Minimum Nescience Principle
Papers that mentioned: 1

Very Likely Science (75)

pypi: ICONCLASS

A multilingual subject classification system for cultural content
Papers that mentioned: 1

Very Likely Science (65)

pypi: dbcluster

Database Cluster Session Manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: dada

Dada – a CLI project manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: ide

Papers that mentioned: 1

Very Likely Science (65)

pypi: ideal

Implementation of the iDEAL v3.3.1 specification in Python.
Papers that mentioned: 1

Very Likely Science (65)

pypi: nestly

Nestly is a collection of functions designed to make running software with combinatorial choices of parameters easier.
Papers that mentioned: 1

Very Likely Science (80)

pypi: seq-tools

Python tools for working with biological sequence data
Papers that mentioned: 1

Very Likely Science (100)

pypi: ideas

Easy creation of import hooks to test ideas.
Papers that mentioned: 1

Very Likely Science (65)

pypi: sequana

A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: dac

Tool to distribute data as code
Papers that mentioned: 1

Very Likely Science (80)

pypi: D3GB

Creates an interactive genome browser with python
Papers that mentioned: 1

Very Likely Science (80)

pypi: idol

idol codegen library tools
Papers that mentioned: 1

Very Likely Science (65)

pypi: device

it just a test!
Papers that mentioned: 1

Very Likely Science (65)

pypi: NetComp

Network Comparison
Papers that mentioned: 1

Very Likely Science (75)

pypi: deviaTE

Analysis and visualization of mobile genetic element composition
Papers that mentioned: 1

Very Likely Science (75)

pypi: netlib

A collection of network utilities used by pathod and mitmproxy.
Papers that mentioned: 1

Very Likely Science (75)

cran: sleepr

Analyse Activity and Sleep Behaviour
Papers that mentioned: 1

Very Likely Science (75)

pypi: vbox

VirtualBox CLI bindings
Papers that mentioned: 1

Very Likely Science (85)

pypi: cvt

Image Transformation Package
Papers that mentioned: 1

Very Likely Science (65)

pypi: ctrl-v

Code snippet store
Papers that mentioned: 1

Very Likely Science (65)

pypi: NetLSD

NetLSD descriptors for graphs. Compare and analyze graph structure on multiple levels!
Papers that mentioned: 1

Very Likely Science (80)

pypi: Playoff

This is the official OAuth 2.0 Python client SDK for the Playoff API
Papers that mentioned: 1

Very Likely Science (65)

cran: slider

Sliding Window Functions
Papers that mentioned: 1

Very Likely Science (83)

cran: prioritylasso

Analyzing Multiple Omics Data with an Offset Approach
Papers that mentioned: 1

Very Likely Science (83)

pypi: vbind

sRNA profiler
Papers that mentioned: 1

Very Likely Science (80)

cran: SmCCNet

Sparse Multiple Canonical Correlation Network Analysis Tool
Papers that mentioned: 1

Very Likely Science (100)

pypi: pccc

Python Conventional Commit Checker
Papers that mentioned: 1

Very Likely Science (65)

pypi: netplot

Ultralight 3D renderer of neural network architecture for TF/Keras Models
Papers that mentioned: 1

Very Likely Science (95)

pypi: informer

debug tool
Papers that mentioned: 1

Very Likely Science (85)

pypi: SequenceAligner

FASTA sequence aligner - test
Papers that mentioned: 1

Very Likely Science (65)

pypi: cpgen

Random test-cases generator for competitive programming
Papers that mentioned: 1

Very Likely Science (65)

pypi: netrd

netrd: A library for network {reconstruction, distances, dynamics}
Papers that mentioned: 1

Very Likely Science (100)

pypi: iload

Load or reload python object
Papers that mentioned: 1

Very Likely Science (65)

pypi: desolver

Differential Equation System Solver
Papers that mentioned: 1

Very Likely Science (100)

pypi: cox-nnet

Extension of neural networks for Cox Regression
Papers that mentioned: 1

Very Likely Science (90)

pypi: cost

Papers that mentioned: 1

Unlikely Science (0)

cran: SOIL

Sparsity Oriented Importance Learning
Papers that mentioned: 1

Very Likely Science (95)

cran: soilDB

Soil Database Interface
Papers that mentioned: 1

Very Likely Science (90)

pypi: vcam

Papers that mentioned: 1

Very Likely Science (65)

pypi: cos2

Chinac COS (Object Storage Service) SDK
Papers that mentioned: 1

Very Likely Science (65)

pypi: nettools

A tool allowing to create, calculate and manipulate networks and subnetworks easily
Papers that mentioned: 1

Very Likely Science (75)

pypi: descriptors

A collection of descriptors for validating input data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: contour3d

Contour 3D algorithm for grid data.
Papers that mentioned: 1

Very Likely Science (75)