Packages with Software Mentions in Scientific Papers

pypi: cpa

full life cycle management for python apps and libs
Papers that mentioned: 1

Very Likely Science (65)

cran: Rlof

R Parallel Implementation of Local Outlier Factor(LOF)
Papers that mentioned: 1

Very Likely Science (75)

pypi: minfo

Python-based mutual information estimator, designed for multiple data types.
Papers that mentioned: 1

Very Likely Science (71)

pypi: synapseclient

A client for Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.
Papers that mentioned: 1

Very Likely Science (100)

pypi: trackC

Track view of chromosome conformation and multi-omics data
Papers that mentioned: 1

Likely Science (40)

pypi: Rootkit

Papers that mentioned: 1

Very Likely Science (65)

A series of convenience functions to make basic image processing functions such as translation, rotation, resizing, skeletonization, displaying Matplotlib images, sorting contours, detecting edges, and much more easier with OpenCV and both Python 2.7 and Python 3.
Papers that mentioned: 1

Very Likely Science (85)

cran: TEQR

Target Equivalence Range Design
Papers that mentioned: 1

Very Likely Science (75)

cran: Ternary

Create Ternary and Holdridge Plots
Papers that mentioned: 1

Very Likely Science (100)

pypi: MiniML

MiniML - a minimal machine learning API based on Apache MADlib and PostgreSQL
Papers that mentioned: 1

Very Likely Science (90)

cran: textreuse

Detect Text Reuse and Document Similarity
Papers that mentioned: 1

Very Likely Science (95)

pypi: sate

Simple command-line task runner
Papers that mentioned: 1

Very Likely Science (65)

pypi: incr

++ operator in python
Papers that mentioned: 1

Very Likely Science (65)

pypi: goby

Python API for reading binary data files created with the Goby next-gen data management framework.
Papers that mentioned: 1

Very Likely Science (80)

pypi: methcomp

methcomp: method comparison for clinical chemistry
Papers that mentioned: 1

Very Likely Science (90)

cran: TestCor

FWER and FDR Controlling Procedures for Multiple Correlation Tests
Papers that mentioned: 1

Very Likely Science (85)

cran: tgram

Compute and Plot Tracheidograms
Papers that mentioned: 1

Very Likely Science (75)

pypi: typescript

TypeScript for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: kodak

HTTP server for uploading images and generating thumbnails
Papers that mentioned: 1

Very Likely Science (80)

cran: Skillings.Mack

The Skillings-Mack Test Statistic for Block Designs with Missing Observations
Papers that mentioned: 1

Very Likely Science (75)

pypi: typ

A simple python testing wrapper
Papers that mentioned: 1

Very Likely Science (65)

pypi: optima

PyTorch Optimization Framework for Researchers
Papers that mentioned: 1

Very Likely Science (75)

pypi: swa

Papers that mentioned: 1

Unlikely Science (0)

pypi: fubar

PBKDF2-AES-CTR-HMAC-SHA256-RSA-PKCS#1-OAEP-PSS-bencode wrapper
Papers that mentioned: 1

Very Likely Science (65)

pypi: misic

Microbe segmentation in dense colonies
Papers that mentioned: 1

Very Likely Science (65)

pypi: kgd

Tool for retrieving information on tax payments by Kazakhstan companies
Papers that mentioned: 1

Likely Science (40)

pypi: kornia

Open Source Differentiable Computer Vision Library for PyTorch
Papers that mentioned: 1

Very Likely Science (100)

cran: smoothmest

Smoothed M-Estimators for 1-Dimensional Location
Papers that mentioned: 1

Very Likely Science (75)

pypi: typer

Typer, build great CLIs. Easy to code. Based on Python type hints.
Papers that mentioned: 1

Very Likely Science (65)

pypi: correlate

Correlates two sets of data by matching
Papers that mentioned: 1

Very Likely Science (65)

pypi: mirror

Mirror for open source mirror site to sync files
Papers that mentioned: 1

Very Likely Science (65)

pypi: traffic

A toolbox for manipulating and analysing air traffic data
Papers that mentioned: 1

Very Likely Science (100)

pypi: fuchsia

Fuchsia reduces differential equations for Feynman master integrals to canonical form
Papers that mentioned: 1

Very Likely Science (90)

pypi: TranscriptSim

Package for Coaching Session Transcripts Similarity Calculations
Papers that mentioned: 1

Very Likely Science (65)

cran: upsetjs

'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set Intersections
Papers that mentioned: 1

Very Likely Science (75)

pypi: mk

mk
Papers that mentioned: 1

Very Likely Science (65)

pypi: MNSD

Papers that mentioned: 1

Very Likely Science (65)

pypi: mixer

Mixer -- Is a fixtures replacement. Supported Django ORM, SqlAlchemy ORM, Mongoengine ODM and custom python objects.
Papers that mentioned: 1

Very Likely Science (100)

cran: BBMV

Models for Continuous Traits Evolving in Macroevolutionary Landscapes of any Shape
Papers that mentioned: 1

Very Likely Science (85)

pypi: Toolserver

Toolserver Framework for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: keras-rl

Deep Reinforcement Learning for Keras
Papers that mentioned: 1

Very Likely Science (100)

pypi: typeform

Python Client wrapper for Typeform API
Papers that mentioned: 1

Very Likely Science (65)

pypi: swirl

Some sugar for asynchronous Tornado code
Papers that mentioned: 1

Likely Science (40)

pypi: twython

Actively maintained, pure Python wrapper for the Twitter API. Supports both normal and streaming Twitter APIs
Papers that mentioned: 1

Very Likely Science (100)

cran: RSocrata

Download or Upload 'Socrata' Data Sets
Papers that mentioned: 1

Very Likely Science (65)

pypi: kafka-python

Pure Python client for Apache Kafka
Papers that mentioned: 1

Very Likely Science (85)

pypi: rolling

Efficient rolling window algorithms
Papers that mentioned: 1

Very Likely Science (100)

pypi: jsonschema

An implementation of JSON Schema validation for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: functools

Fast tools for functional programming
Papers that mentioned: 1

Very Likely Science (65)

pypi: saber

Saber: Sequence Annotator for Biomedical Entities and Relations
Papers that mentioned: 1

Very Likely Science (100)

pypi: modelbase

A package to build metabolic models
Papers that mentioned: 1

Very Likely Science (90)

pypi: fungi

A set of common utilities for iNotify (based on iNotify Simple) that makes it a little easier to work with
Papers that mentioned: 1

Very Likely Science (65)

cran: sos

Search Contributed R Packages, Sort by Package
Papers that mentioned: 1

Very Likely Science (75)

pypi: jsonpickle

Python library for serializing any arbitrary object graph into JSON
Papers that mentioned: 1

Very Likely Science (100)

pypi: kakao

Papers that mentioned: 1

Unlikely Science (0)

pypi: aiocoap

Python CoAP library
Papers that mentioned: 1

Very Likely Science (100)

pypi: jscatter

Combines dataArrays with attributes for fitting plotting and analysis including models for Xray and neutron scattering
Papers that mentioned: 1

Very Likely Science (90)

pypi: sure

utility belt for automated testing in python for python
Papers that mentioned: 1

Very Likely Science (60)

pypi: funniest

The funniest joke in the world
Papers that mentioned: 1

Very Likely Science (65)

cran: sparsebn

Papers that mentioned: 1

Unlikely Science (0)

cran: rNMF

Robust Nonnegative Matrix Factorization
Papers that mentioned: 1

Very Likely Science (75)

pypi: JSNMF

Papers that mentioned: 1

Unlikely Science (0)

pypi: gadfly

Gadfly relational database
Papers that mentioned: 1

Very Likely Science (65)

pypi: MobileWorks

A library for the MobileWorks API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: judoka

Project scoped command execution to just do your work
Papers that mentioned: 1

Very Likely Science (65)

pypi: clarity

A colored logger for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: TWP

tweet with picture
Papers that mentioned: 1

Very Likely Science (65)

cran: phd

Permutation Testing in High-Dimensional Linear Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: nsa

Papers that mentioned: 1

Unlikely Science (0)

pypi: treelab

Papers that mentioned: 1

Very Likely Science (65)

pypi: mod-wsgi

Installer for Apache/mod_wsgi.
Papers that mentioned: 1

Very Likely Science (100)

cran: RMKdiscrete

Sundry Discrete Probability Distributions
Papers that mentioned: 1

Very Likely Science (83)

pypi: classes

Smart, pythonic, ad-hoc, typed polymorphism for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: saddlebags

Saddlebags provides easy loading and access to the data elements of JSON/YAML configuration files.
Papers that mentioned: 1

Very Likely Science (65)

pypi: molsets

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: torchio

Tools for medical image processing with PyTorch
Papers that mentioned: 1

Very Likely Science (100)

pypi: ClassificaIO

Graphical User Interface for machine learning classification algorithms from scikit-learn
Papers that mentioned: 1

Very Likely Science (100)

cran: spBayesSurv

Bayesian Modeling and Analysis of Spatially Correlated Survival Data
Papers that mentioned: 1

Very Likely Science (85)

cran: sparseSVM

Solution Paths of Sparse High-Dimensional Support Vector Machine with Lasso or Elastic-Net Regularization
Papers that mentioned: 1

Very Likely Science (75)

pypi: saenopy

Semi-elastic fiber optimisation in python.
Papers that mentioned: 1

Very Likely Science (65)

cran: sparsenet

Fit Sparse Linear Regression Models via Nonconvex Optimization
Papers that mentioned: 1

Very Likely Science (93)

pypi: miRge-build

miRge-build: Building libraries of small RNA sequencing Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: monai

AI Toolkit for Healthcare Imaging
Papers that mentioned: 1

Very Likely Science (100)

pypi: moniker

Simple batch file renaming tool.
Papers that mentioned: 1

Very Likely Science (65)

pypi: mono

Papers that mentioned: 1

Unlikely Science (0)

cran: pgmm

Parsimonious Gaussian Mixture Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: Cell-BLAST

Single-cell transcriptome querying tool
Papers that mentioned: 1

Very Likely Science (80)

pypi: Agree

Simple argument resolution.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ganesh

trying to upload it to pypi
Papers that mentioned: 1

Very Likely Science (65)

cran: vivid

Variable Importance and Variable Interaction Displays
Papers that mentioned: 1

Very Likely Science (75)

cran: rsparse

Statistical Learning on Sparse Matrices
Papers that mentioned: 1

Very Likely Science (97)

pypi: garnett

Samples, parsers, and writers for formats used in the Glotzer Group.
Papers that mentioned: 1

Very Likely Science (80)

cran: vennplot

Venn Diagrams in 2D and 3D
Papers that mentioned: 1

Very Likely Science (75)

pypi: submitter

Simple SGE job submitter.
Papers that mentioned: 1

Very Likely Science (85)

pypi: open3SPN2

An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
Papers that mentioned: 1

Very Likely Science (100)

cran: VGAMdata

Data Supporting the 'VGAM' Package
Papers that mentioned: 1

Very Likely Science (83)

cran: RSpectra

Solvers for Large-Scale Eigenvalue and SVD Problems
Papers that mentioned: 1

Very Likely Science (75)

pypi: mdf

MDF - Data Flow Programming Toolkit
Papers that mentioned: 1

Very Likely Science (65)

cran: specr

Conducting and Visualizing Specification Curve Analyses
Papers that mentioned: 1

Very Likely Science (100)

cran: ssr

Semi-Supervised Regression Methods
Papers that mentioned: 1

Very Likely Science (85)