Packages with Software Mentions in Scientific Papers

pypi: ene

Automatically track and sync anime watching progress
Papers that mentioned: 1

Very Likely Science (65)

cran: grainchanger

Moving-Window and Direct Data Aggregation
Papers that mentioned: 1

Very Likely Science (75)

pypi: rafm

rafm
Papers that mentioned: 1

Very Likely Science (80)

cran: frailtyEM

Fitting Frailty Models with the EM Algorithm
Papers that mentioned: 1

Very Likely Science (93)

cran: FinCal

Time Value of Money, Time Series Analysis and Computational Finance
Papers that mentioned: 1

Very Likely Science (89)

cran: FGSG

Feature Grouping and Selection Over an Undirected Graph
Papers that mentioned: 1

Very Likely Science (83)

cran: ffbase

Papers that mentioned: 1

Unlikely Science (0)

pypi: htmd

Write Markdown and Jinja2 templates to create a website
Papers that mentioned: 1

Likely Science (40)

cran: treeDA

Tree-Based Discriminant Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: IUPS

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: genotypeeval

QA/QC of a gVCF or VCF file
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: ILoReg

ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data
Papers that mentioned: 1

Very Likely Science (100)

pypi: astar

generic A-Star path searching algorithm
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: GenomicDistributions

GenomicDistributions: fast analysis of genomic intervals with Bioconductor
Papers that mentioned: 1

Very Likely Science (100)

cran: jcolors

Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2'
Papers that mentioned: 1

Very Likely Science (100)

cran: jenga

Fast Extrapolation of Time Features using K-Nearest Neighbors
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: GEWIST

Gene Environment Wide Interaction Search Threshold
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: CytoTree

Papers that mentioned: 1

Unlikely Science (0)

cran: globe

Plot 2D and 3D Views of the Earth, Including Major Coastline
Papers that mentioned: 1

Very Likely Science (83)

cran: GMDH

Short Term Forecasting via GMDH-Type Neural Network Algorithms
Papers that mentioned: 1

Very Likely Science (93)

pypi: 3DCORE

3D Coronal Rope Ejection Model
Papers that mentioned: 1

Very Likely Science (100)

cran: GmAMisc

'Gianmarco Alberti' Miscellaneous
Papers that mentioned: 1

Very Likely Science (75)

pypi: pas

Secure password manager..
Papers that mentioned: 1

Very Likely Science (65)

cran: SimSurvey

Test Surveys by Simulating Spatially-Correlated Populations
Papers that mentioned: 1

Very Likely Science (100)

pypi: astrolabe

Timer library for recording performance metrics.
Papers that mentioned: 1

Very Likely Science (65)

pypi: neurofinder

evaluate neuron finding algorithms
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: MethCP

Differential methylation anlsysis for bisulfite sequencing data
Papers that mentioned: 1

Very Likely Science (100)

cran: GNRS

Access the 'Geographic Name Resolution Service'
Papers that mentioned: 1

Very Likely Science (75)

pypi: 3to2

Refactors valid 3.x syntax into valid 2.x syntax, if a syntactical conversion is possible
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: girafe

Genome Intervals and Read Alignments for Functional Exploration
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: MACPET

Papers that mentioned: 1

Unlikely Science (0)

cran: ExpertChoice

Design of Discrete Choice and Conjoint Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: Aadhar

Python Library to validate and generate aadhar numbers
Papers that mentioned: 1

Very Likely Science (65)

cran: GOxploreR

Structural Exploration of the Gene Ontology (GO) Knowledge Base
Papers that mentioned: 1

Very Likely Science (85)

pypi: ternary

Ternary operation implementation
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: combi

Compositional omics model based visual integration
Papers that mentioned: 1

Very Likely Science (100)

pypi: reasoner

Reasoner common components
Papers that mentioned: 1

Very Likely Science (80)

pypi: mitocyto

Image analysis of cells in serial sections
Papers that mentioned: 1

Very Likely Science (90)

cran: extraBinomial

Extra-binomial approach for pooled sequencing data
Papers that mentioned: 1

Very Likely Science (85)

cran: jocre

Joint Confidence Regions
Papers that mentioned: 1

Very Likely Science (100)

cran: epiphy

Papers that mentioned: 1

Unlikely Science (0)

pypi: specific

Specific - spec-first web framework
Papers that mentioned: 1

Very Likely Science (100)

pypi: cvui

A (very) simple UI lib built on top of OpenCV drawing primitives
Papers that mentioned: 1

Very Likely Science (85)

cran: joineRML

Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes
Papers that mentioned: 1

Very Likely Science (100)

pypi: reb

Regular Expression Beautiful
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: clonotypeR

Papers that mentioned: 1

Unlikely Science (0)

pypi: fitlins

Fit Linear Models to BIDS Datasets
Papers that mentioned: 1

Very Likely Science (100)

pypi: atelier

A collection of tools for software artists
Papers that mentioned: 1

Very Likely Science (80)

pypi: onecodex

One Codex API client and Python library
Papers that mentioned: 1

Very Likely Science (100)

cran: JOPS

Practical Smoothing with P-Splines
Papers that mentioned: 1

Very Likely Science (75)

cran: explor

Interactive Interfaces for Results Exploration
Papers that mentioned: 1

Very Likely Science (91)

cran: EpiStats

Tools for Epidemiologists
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: cellscape

Explores single cell copy number profiles in the context of a single cell tree
Papers that mentioned: 1

Very Likely Science (90)

pypi: abf

Abstract Binary Format manipulation : elf pe mach-o
Papers that mentioned: 1

Very Likely Science (65)

pypi: fitparse

Python library to parse ANT/Garmin .FIT files
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: h5vc

Managing alignment tallies using a hdf5 backend
Papers that mentioned: 1

Very Likely Science (75)

pypi: Ammonia

task queue
Papers that mentioned: 1

Very Likely Science (65)

cran: elasso

Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
Papers that mentioned: 1

Very Likely Science (60)

cran: edina

Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model
Papers that mentioned: 1

Very Likely Science (100)

cran: easyreg

Easy Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: dynamac

Dynamic Simulation and Testing for Single-Equation ARDL Models
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: HiCBricks

Framework for Storing and Accessing Hi-C Data Through HDF Files
Papers that mentioned: 1

Very Likely Science (65)

pypi: pdf2jpg

Wrapper to convert PDF files into jpg
Papers that mentioned: 1

Likely Science (40)

bioconductor: lpNet

Linear Programming Model for Network Inference
Papers that mentioned: 1

Very Likely Science (100)

pypi: atp

An adaptive thread pool implementation
Papers that mentioned: 1

Likely Science (40)

pypi: fitted

Machine learning tools
Papers that mentioned: 1

Very Likely Science (90)

pypi: engal

Simple photo gallery
Papers that mentioned: 1

Very Likely Science (65)

cran: gRapfa

Acyclic Probabilistic Finite Automata
Papers that mentioned: 1

Very Likely Science (75)

pypi: rec

a collection of some useful regular expressions.
Papers that mentioned: 1

Very Likely Science (75)

pypi: mkl

Intel® oneAPI Math Kernel Library
Papers that mentioned: 1

Very Likely Science (80)

cran: tribe

Play with the Tribe of Attributes
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: epivizr

R Interface to epiviz web app
Papers that mentioned: 1

Very Likely Science (90)

cran: GREMLINS

Generalized Multipartite Networks
Papers that mentioned: 1

Very Likely Science (93)

pypi: about

Software Metadata for Humans
Papers that mentioned: 1

Very Likely Science (65)

cran: mvnfast

Fast Multivariate Normal and Student's t Methods
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: hyperdraw

Visualizing Hypergaphs
Papers that mentioned: 1

Very Likely Science (98)

bioconductor: hypergraph

A package providing hypergraph data structures
Papers that mentioned: 1

Very Likely Science (90)

pypi: abp

Port of C++ due to Simon Anders and Hans J Briegel
Papers that mentioned: 1

Very Likely Science (67)

bioconductor: Icens

NPMLE for Censored and Truncated Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: attune

Tools for tuning optical parametric amplifiers and multidimensional spectrometers.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: alsace

Papers that mentioned: 1

Unlikely Science (0)

pypi: HTMLParser

Backport of HTMLParser from python 2.7
Papers that mentioned: 1

Very Likely Science (65)

pypi: aud

aud is a python package that aims to make bulk file edits easy enough for anyone with minimal scripting or python knowledge
Papers that mentioned: 1

Very Likely Science (80)

cran: tricolore

A Flexible Color Scale for Ternary Compositions
Papers that mentioned: 1

Very Likely Science (75)

cran: groupedSurv

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function
Papers that mentioned: 1

Very Likely Science (83)

pypi: fizz

fizzbuzz is a python package for acing fizzbuzz questions at coding interviews.
Papers that mentioned: 1

Very Likely Science (65)

pypi: WTForms

Form validation and rendering for Python web development.
Papers that mentioned: 1

Very Likely Science (65)

pypi: smoothie

Python Exception Based Callbacks
Papers that mentioned: 1

Very Likely Science (65)

pypi: acd

Hierarchical interpretatations and contextual decomposition in pytorch
Papers that mentioned: 1

Very Likely Science (100)

pypi: dbf

Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
Papers that mentioned: 1

Very Likely Science (65)

cran: interplot

Plot the Effects of Variables in Interaction Terms
Papers that mentioned: 1

Very Likely Science (100)

cran: interep

Interaction Analysis of Repeated Measure Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: audioread

Multi-library, cross-platform audio decoding.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: iterativeBMAsurv

The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival Analysis
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: IWTomics

Interval-Wise Testing for Omics Data
Papers that mentioned: 1

Very Likely Science (98)

pypi: ach

Library to create and parse ACH files (NACHA)
Papers that mentioned: 1

Very Likely Science (85)

pypi: audition

A small web framework that validates requests and provides an API.
Papers that mentioned: 1

Very Likely Science (65)

pypi: aclust

streaming agglomerative clustering
Papers that mentioned: 1

Very Likely Science (100)

pypi: Flag

Simple flag library for python
Papers that mentioned: 1

Very Likely Science (65)

pypi: splot

Visual analytics for spatial analysis with PySAL.
Papers that mentioned: 1

Very Likely Science (100)