Packages with Software Mentions in Scientific Papers

GPL is an unsupervised domain adaptation method for training dense retrievers. It is based on query generation and pseudo labeling with powerful cross-encoders. To train a domain-adapted model, it needs only the unlabeled target corpus and can achieve significant improvement over zero-shot models.
Papers that mentioned: 1

Very Likely Science (100)

cran: basemaps

Accessing Spatial Basemaps in R
Papers that mentioned: 1

Very Likely Science (75)

cran: bamp

Bayesian Age-Period-Cohort Modeling and Prediction
Papers that mentioned: 1

Very Likely Science (100)

cran: bamboo

Protein Secondary Structure Prediction Using the Bamboo Method
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: Mulcom

Calculates Mulcom test
Papers that mentioned: 1

Very Likely Science (90)

cran: babette

Control 'BEAST2'
Papers that mentioned: 1

Very Likely Science (75)

cran: divDyn

Diversity Dynamics using Fossil Sampling Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: CROPS

Cropping and Renumbering Operations for PDB structure and Sequence files
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources
Papers that mentioned: 1

Very Likely Science (100)

cran: RTCC

Detecting Trait Clustering in Environmental Gradients
Papers that mentioned: 1

Very Likely Science (75)

pypi: crown

crown is a simple and small ORM for Time Series Database (TSDB) tdengine(taos), making it easy to learn and intuitive to use.
Papers that mentioned: 1

Possibly Science (35)

pypi: CRRD

China Railway Radio Decoder
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BiocVersion

Set the appropriate version of Bioconductor packages
Papers that mentioned: 1

Very Likely Science (75)

cran: elect

Estimation of Life Expectancies Using Multi-State Models
Papers that mentioned: 1

Very Likely Science (83)

pypi: crystal-torture

A Crystal Tortuosity Module
Papers that mentioned: 1

Very Likely Science (100)

cran: aRxiv

Interface to the arXiv API
Papers that mentioned: 1

Very Likely Science (100)

pypi: clp

Container Loading Problem
Papers that mentioned: 1

Very Likely Science (100)

pypi: JaqalPaq-extras

Python tools for Jaqal (extras)
Papers that mentioned: 1

Very Likely Science (80)

cran: eurostat

Tools for Eurostat Open Data
Papers that mentioned: 1

Very Likely Science (100)

cran: EFAtools

Fast and Flexible Implementations of Exploratory Factor Analysis Tools
Papers that mentioned: 1

Very Likely Science (100)

pypi: jh

Papers that mentioned: 1

Very Likely Science (65)

pypi: momepy

Urban Morphology Measuring Toolkit
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: bioassayR

Cross-target analysis of small molecule bioactivity
Papers that mentioned: 1

Very Likely Science (100)

cran: eesim

Simulate and Evaluate Time Series for Environmental Epidemiology
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rols

An R interface to the Ontology Lookup Service
Papers that mentioned: 1

Very Likely Science (100)

pypi: moneta

Emulator for different kinds (Debian/Yum/Pypi/Maven/…) of package repositories on the same server.
Papers that mentioned: 1

Very Likely Science (65)

cran: EdSurvey

Analysis of NCES Education Survey and Assessment Data
Papers that mentioned: 1

Very Likely Science (85)

pypi: scd

Something Completely different
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: rpx

R Interface to the ProteomeXchange Repository
Papers that mentioned: 1

Very Likely Science (100)

pypi: comparator

Utility for comparing results between data sources
Papers that mentioned: 1

Likely Science (40)

cran: EDOIF

Empirical Distribution Ordering Inference Framework (EDOIF)
Papers that mentioned: 1

Very Likely Science (100)

cran: evdbayes

Bayesian Analysis in Extreme Value Theory
Papers that mentioned: 1

Very Likely Science (85)

cran: eGST

Leveraging eQTLs to Identify Individual-Level Tissue of Interest for a Complex Trait
Papers that mentioned: 1

Very Likely Science (81)

cran: edmdata

Data Sets for Psychometric Modeling
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BiocStyle

Standard styles for vignettes and other Bioconductor documents
Papers that mentioned: 1

Very Likely Science (100)

cran: SSRA

Sakai Sequential Relation Analysis
Papers that mentioned: 1

Very Likely Science (93)

pypi: glmtools

GLMtools
Papers that mentioned: 1

Very Likely Science (80)

pypi: isi

sample test
Papers that mentioned: 1

Very Likely Science (65)

pypi: moment

Dealing with dates and times should be easy
Papers that mentioned: 1

Very Likely Science (65)

cran: EHRtemporalVariability

Delineating Temporal Dataset Shifts in Electronic Health Records
Papers that mentioned: 1

Very Likely Science (95)

cran: eigenmodel

Semiparametric Factor and Regression Models for Symmetric Relational Data
Papers that mentioned: 1

Very Likely Science (93)

cran: eirm

Explanatory Item Response Modeling for Dichotomous and Polytomous Items
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BBCAnalyzer

BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Papers that mentioned: 1

Very Likely Science (90)

cran: elec

Collection of Functions for Statistical Election Audits
Papers that mentioned: 1

Very Likely Science (93)

cran: EmpiricalCalibration

Routines for Performing Empirical Calibration of Observational Study Estimates
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: rqt

rqt: utilities for gene-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: EloOptimized

Optimized Elo Rating Method for Obtaining Dominance Ranks
Papers that mentioned: 1

Very Likely Science (83)

cran: EFA.MRFA

Dimensionality Assessment Using Minimum Rank Factor Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: EcoNetGen

Simulate and Sample from Ecological Interaction Networks
Papers that mentioned: 1

Very Likely Science (100)

pypi: monica

monica is a command line chef that brings you tasty food
Papers that mentioned: 1

Very Likely Science (65)

cran: ssfa

Spatial Stochastic Frontier Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: Cepo

Cepo for the identification of differentially stable genes
Papers that mentioned: 1

Very Likely Science (100)

pypi: companion

Companion robot
Papers that mentioned: 1

Very Likely Science (65)

pypi: scenario

SCENe interfAces for Robot Input/Output.
Papers that mentioned: 1

Very Likely Science (80)

pypi: kachery

Please use kachery-cloud instead
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BANDITS

BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Papers that mentioned: 1

Very Likely Science (100)

pypi: Scavager

Proteomics post-search algorithm
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BaalChIP

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: attract

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Papers that mentioned: 1

Very Likely Science (100)

pypi: scattertext

An NLP package to visualize interesting terms in text.
Papers that mentioned: 1

Very Likely Science (81)

cran: ecolottery

Coalescent-Based Simulation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (85)

pypi: moveit

ns_server master events analyzer
Papers that mentioned: 1

Very Likely Science (65)

cran: EBEN

Empirical Bayesian Elastic Net
Papers that mentioned: 1

Very Likely Science (85)

pypi: molyso

MOther machine anaLYsis SOftware
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: biovizBase

Basic graphic utilities for visualization of genomic data.
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: biscuiteer

Convenience Functions for Biscuit
Papers that mentioned: 1

Very Likely Science (100)

cran: echarts4r

Create Interactive Graphs with 'Echarts JavaScript' Version 5
Papers that mentioned: 1

Very Likely Science (75)

cran: EBglmnet

Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: monitors

monitor tools
Papers that mentioned: 1

Very Likely Science (80)

cran: easyalluvial

Generate Alluvial Plots with a Single Line of Code
Papers that mentioned: 1

Very Likely Science (75)

pypi: sarah

Library with miscellaneous functionality
Papers that mentioned: 1

Very Likely Science (65)

cran: spTimer

Spatio-Temporal Bayesian Modelling
Papers that mentioned: 1

Very Likely Science (85)

pypi: iron

iron: the powerful but simple build tool using flows.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BufferedMatrix

A matrix data storage object held in temporary files
Papers that mentioned: 1

Very Likely Science (100)

cran: DysPIAData

Background and Pathway Data Used in 'DysPIA'
Papers that mentioned: 1

Very Likely Science (85)

cran: bayescount

Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
Papers that mentioned: 1

Very Likely Science (85)

pypi: scatterbrain

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BUSpaRse

kallisto | bustools R utilities
Papers that mentioned: 1

Very Likely Science (100)

pypi: GPGO

Bayesian Optimization with Gaussian Process as surrogate model
Papers that mentioned: 1

Very Likely Science (75)

pypi: ESRNN

Pytorch implementation of the ESRNN
Papers that mentioned: 1

Very Likely Science (83)

pypi: ippai

Image Processing for Photoacoustic Imaging
Papers that mentioned: 1

Very Likely Science (65)

pypi: moltemplate

A general cross-platform text-based molecule builder for LAMMPS
Papers that mentioned: 1

Very Likely Science (100)

pypi: iostream

iostream for Python
Papers that mentioned: 1

Likely Science (40)

cran: dvir

Disaster Victim Identification
Papers that mentioned: 1

Very Likely Science (81)

cran: dupiR

Bayesian inference from count data using discrete uniform priors
Papers that mentioned: 1

Very Likely Science (85)

pypi: precise

The home of Schur Hierarchical Portfolios: an aesthetically pleasing version of Hierarchical Risk Parity
Papers that mentioned: 1

Likely Science (40)

cran: RSwissMaps

Plot and Save Customised Swiss Maps
Papers that mentioned: 1

Very Likely Science (75)

pypi: complexity

A refreshingly simple static site generator, for those who like to work in HTML.
Papers that mentioned: 1

Very Likely Science (65)

pypi: scGeneFit

Genetic marker selection with linear programming
Papers that mentioned: 1

Very Likely Science (91)