Packages with Software Mentions in Scientific Papers

pypi: fastools

FASTA/FASTQ analysis and manipulation toolkit.
Papers that mentioned: 1

Very Likely Science (90)

pypi: appdirs

A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
Papers that mentioned: 1

Very Likely Science (65)

pypi: alf

OAuth Client
Papers that mentioned: 1

Very Likely Science (65)

cran: ems

Epimed Solutions Collection for Data Editing, Analysis, and Benchmark of Health Units
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: cancerclass

Development and validation of diagnostic tests from high-dimensional molecular data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: CancerInSilico

An R interface for computational modeling of tumor progression
Papers that mentioned: 1

Very Likely Science (100)

pypi: applicake

A framework that simplifies the wrapping of external tools by standardizing input parameters, logging messages and output streams.
Papers that mentioned: 1

Very Likely Science (65)

pypi: acn

Papers that mentioned: 1

Unlikely Science (0)

cran: enetLTS

Robust and Sparse Methods for High Dimensional Linear and Binary and Multinomial Regression
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: MAGAR

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
Papers that mentioned: 1

Very Likely Science (100)

pypi: acid

Papers that mentioned: 1

Unlikely Science (0)

pypi: AccessControl

Security framework for Zope.
Papers that mentioned: 1

Very Likely Science (80)

pypi: ev3dev-c

LEGO MINDSTORMS EV3 Debian C library + Python, Ruby and Perl wrappers
Papers that mentioned: 1

Very Likely Science (65)

pypi: accept

Parse and order a HTTP Accept header.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: CexoR

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Papers that mentioned: 1

Very Likely Science (98)

bioconductor: CellTrails

Reconstruction, visualization and analysis of branching trajectories
Papers that mentioned: 1

Very Likely Science (100)

pypi: FilterDict

Store data in JSON format
Papers that mentioned: 1

Very Likely Science (65)

pypi: omnilog

A remote log watcher daemon that uses ssh, and multithreaded design.
Papers that mentioned: 1

Likely Science (40)

pypi: OpenWeb

Open Web Net Library
Papers that mentioned: 1

Very Likely Science (65)

cran: treeheatr

Heatmap-Integrated Decision Tree Visualizations
Papers that mentioned: 1

Very Likely Science (95)

pypi: rdrand

Python interface to Intel hardware rng
Papers that mentioned: 1

Very Likely Science (80)

cran: met

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: ChIPanalyser

ChIPanalyser: Predicting Transcription Factor Binding Sites
Papers that mentioned: 1

Very Likely Science (90)

pypi: approx

Set of tools for comparing complex objects
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ChIPsim

Simulation of ChIP-seq experiments
Papers that mentioned: 1

Very Likely Science (85)

pypi: SQLObject

Object-Relational Manager, aka database wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: meaRtools

Papers that mentioned: 1

Unlikely Science (0)

cran: shp2graph

Convert a SpatialLinesDataFrame Object to an 'igraph'-Class Object
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: clippda

A package for the clinical proteomic profiling data analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: sqlacodegen

Automatic model code generator for SQLAlchemy
Papers that mentioned: 1

Very Likely Science (65)

pypi: stage

Configuration over convention.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ClusterJudge

Judging Quality of Clustering Methods using Mutual Information
Papers that mentioned: 1

Very Likely Science (90)

pypi: barnaba

analyze nucleic acid 3D structures and MD trajectories
Papers that mentioned: 1

Very Likely Science (86)

pypi: ADLES

Automated Deployment of Lab Environments System (ADLES)
Papers that mentioned: 1

Very Likely Science (94)

pypi: apyori

Simple Apriori algorithm Implementation.
Papers that mentioned: 1

Very Likely Science (90)

cran: epiflows

Predicting Disease Spread from Flow Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: bambi

BAyesian Model Building Interface in Python
Papers that mentioned: 1

Very Likely Science (75)

pypi: Balert

A speaking battery's charge level
Papers that mentioned: 1

Very Likely Science (65)

cran: inops

Infix Operators for Detection, Subsetting and Replacement
Papers that mentioned: 1

Very Likely Science (77)

pypi: aqua

Python 3 client for Aqua's CSP Platform
Papers that mentioned: 1

Very Likely Science (85)

pypi: azure

Microsoft Azure Client Libraries for Python
Papers that mentioned: 1

Very Likely Science (100)

cran: EPX

Ensemble of Phalanxes
Papers that mentioned: 1

Very Likely Science (75)

pypi: aquacrop

Soil-Crop-Water model based on AquaCrop-OS.
Papers that mentioned: 1

Very Likely Science (100)

pypi: awscli

Universal Command Line Environment for AWS.
Papers that mentioned: 1

Possibly Science (35)

cran: ergm.ego

Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
Papers that mentioned: 1

Very Likely Science (85)

cran: ergm.userterms

User-specified Terms for the statnet Suite of Packages
Papers that mentioned: 1

Very Likely Science (75)

cran: es.dif

Compute Effect Sizes of the Difference
Papers that mentioned: 1

Very Likely Science (75)

pypi: av

Pythonic bindings for FFmpeg's libraries.
Papers that mentioned: 1

Very Likely Science (85)

pypi: fin

A small, useful python utility library
Papers that mentioned: 1

Likely Science (40)

cran: tmcn

A Text Mining Toolkit for Chinese
Papers that mentioned: 1

Very Likely Science (75)

cran: essentials

Essential Functions not Included in Base R
Papers that mentioned: 1

Very Likely Science (75)

cran: EstimateGroupNetwork

Perform the Joint Graphical Lasso and Selects Tuning Parameters
Papers that mentioned: 1

Very Likely Science (75)

pypi: autotagger

Tag .mp3 and .m4a audio files from iTunes data automatically.
Papers that mentioned: 1

Very Likely Science (65)

cran: EurosarcBayes

Bayesian Single Arm Sample Size Calculation Software
Papers that mentioned: 1

Very Likely Science (85)

pypi: AutoSmart

Papers that mentioned: 1

Unlikely Science (0)

pypi: symmetry

Symmetry is a library for materials symmetry analysis.
Papers that mentioned: 1

Very Likely Science (90)

pypi: fastlmm

Fast GWAS
Papers that mentioned: 1

Very Likely Science (100)

pypi: omnipath

Python client for the OmniPath web service
Papers that mentioned: 1

Very Likely Science (100)

cran: MC2toPath

Translates information from netcdf files with MC2 output into inter-PVT transitions
Papers that mentioned: 1

Very Likely Science (75)

cran: matlib

Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
Papers that mentioned: 1

Very Likely Science (99)

cran: MAPLES

Papers that mentioned: 1

Unlikely Science (0)

cran: exp2flux

Convert Gene EXPression Data to FBA FLUXes
Papers that mentioned: 1

Very Likely Science (93)

cran: ADPclust

Fast Clustering Using Adaptive Density Peak Detection
Papers that mentioned: 1

Very Likely Science (100)

cran: expp

Spatial Analysis of Extra-Pair Paternity
Papers that mentioned: 1

Very Likely Science (85)

cran: exreport

Fast, Reliable and Elegant Reproducible Research
Papers that mentioned: 1

Very Likely Science (85)

pypi: auDeep

auDeep is a Python toolkit for unsupervised feature learning with deep neural networks (DNNs)
Papers that mentioned: 1

Very Likely Science (90)

pypi: Arase

A module for downloading and reading Arase spacecraft data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: Athlete

UNKNOWN
Papers that mentioned: 1

Very Likely Science (65)

pypi: findCPcli

findCP CLI package
Papers that mentioned: 1

Very Likely Science (75)

cran: ez.combat

Easy ComBat Harmonization
Papers that mentioned: 1

Very Likely Science (83)

pypi: Talaria

Talaria, a geek-friendly content management system
Papers that mentioned: 1

Likely Science (40)

pypi: arcade

Arcade Game Development Library
Papers that mentioned: 1

Very Likely Science (100)

pypi: Oort

A toolkit for accessing RDF graphs as plain objects.
Papers that mentioned: 1

Very Likely Science (65)

pypi: arch

ARCH for Python
Papers that mentioned: 1

Very Likely Science (80)

cran: m2b

Movement to Behaviour Inference using Random Forest
Papers that mentioned: 1

Very Likely Science (81)

pypi: ambiguous

python dark magic
Papers that mentioned: 1

Very Likely Science (65)

cran: FactorsR

Identification of the Factors Affecting Species Richness
Papers that mentioned: 1

Very Likely Science (75)

cran: factorstochvol

Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: amplikyzer2

amplicon methylation analyzer for SFF (flowgrams) and FASTQ (MiSeq) files
Papers that mentioned: 1

Very Likely Science (100)

pypi: findr

Fast Inference of Networks from Directed Regulations
Papers that mentioned: 1

Very Likely Science (100)

pypi: asterix

Manage python components startup quickly and efficiently
Papers that mentioned: 1

Very Likely Science (65)

pypi: arche

Analyze Scrapy Cloud data
Papers that mentioned: 1

Very Likely Science (95)

pypi: architect

A set of tools which enhances ORMs written in Python with more features
Papers that mentioned: 1

Very Likely Science (65)

pypi: illuminate

Analytics toolkit for Illumina sequencer metrics.
Papers that mentioned: 1

Likely Science (40)

bioconductor: consensusDE

RNA-seq analysis using multiple algorithms
Papers that mentioned: 1

Very Likely Science (100)

pypi: testing

The Python Testing Tools Taxonomy
Papers that mentioned: 1

Very Likely Science (65)

pypi: odin

Data-structure definition/validation/traversal, mapping and serialisation toolkit for Python
Papers that mentioned: 1

Very Likely Science (65)

pypi: Terms

A rule production system
Papers that mentioned: 1

Very Likely Science (80)

pypi: Authcode

Awesome authentication code
Papers that mentioned: 1

Very Likely Science (65)

cran: lmem.qtler

Papers that mentioned: 1

Unlikely Science (0)

pypi: archon

A framework for websocket APIs.
Papers that mentioned: 1

Likely Science (40)

pypi: findsame

Find duplicate files and directories using hashes and a Merkle tree
Papers that mentioned: 1

Likely Science (40)

bioconductor: covRNA

Multivariate Analysis of Transcriptomic Data
Papers that mentioned: 1

Very Likely Science (100)

cran: intrinsicDimension

Intrinsic Dimension Estimation
Papers that mentioned: 1

Very Likely Science (75)

pypi: MLNN

Multi-layer neuron network
Papers that mentioned: 1

Very Likely Science (75)

pypi: findsub

Finding and ranking subtitles from subscene by how much they are synced.
Papers that mentioned: 1

Very Likely Science (65)

cran: intubate

Interface to Popular R Functions for Data Science Pipelines
Papers that mentioned: 1

Very Likely Science (85)

pypi: FastHMM

A python package for HMM model with fast train and decoding implementation
Papers that mentioned: 1

Very Likely Science (65)

pypi: reaction

Reaction. ML serving & microservices.
Papers that mentioned: 1

Very Likely Science (80)

cran: fastAdaboost

a Fast Implementation of Adaboost
Papers that mentioned: 1

Very Likely Science (75)