Packages with Software Mentions in Scientific Papers

pypi: RestAPI

An package to wrap website REST services into python.
Papers that mentioned: 1

Likely Science (40)

pypi: edgar

Scrape data from SEC's EDGAR
Papers that mentioned: 1

Very Likely Science (65)

pypi: adcc

adcc: Seamlessly connect your host program to ADC
Papers that mentioned: 1

Very Likely Science (96)

pypi: brainlit

Code to process and analyze brainlit data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: scruff

Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Papers that mentioned: 1

Very Likely Science (100)

pypi: fslutils

Functions working with FSL outputs
Papers that mentioned: 1

Very Likely Science (80)

pypi: bnpy

Bayesian nonparametric machine learning for Python
Papers that mentioned: 1

Very Likely Science (100)

pypi: uas

Random User-Agent
Papers that mentioned: 1

Very Likely Science (65)

pypi: rgs

A small package to display and manipulate random geometry structures like pairings, meanders, triangulations and tilings.
Papers that mentioned: 1

Very Likely Science (65)

pypi: ment

python library to write daily log in markdown quickly and to synthesize daily logs based on category
Papers that mentioned: 1

Very Likely Science (65)

pypi: resourcer

A simple wrapper around 'requests'
Papers that mentioned: 1

Very Likely Science (65)

pypi: pySCATMECH

A Python interface to the SCATMECH library
Papers that mentioned: 1

Very Likely Science (80)

pypi: fsk

Papers that mentioned: 1

Very Likely Science (65)

pypi: adg

A powerful diagram generator and evaluator for many-body formalisms in physics and chemistry
Papers that mentioned: 1

Very Likely Science (100)

pypi: adm

Active Data Mapping, Pre-Alpha Release
Papers that mentioned: 1

Very Likely Science (80)

pypi: MeneTools

Metabolic Network Topology Analysis Tools
Papers that mentioned: 1

Very Likely Science (95)

cran: rmapshaper

Client for 'mapshaper' for 'Geospatial' Operations
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: sagenhaft

Collection of functions for reading and comparing SAGE libraries
Papers that mentioned: 1

Very Likely Science (83)

pypi: bmtools

System informations
Papers that mentioned: 1

Very Likely Science (65)

pypi: bms

Block-Model Simulator for python
Papers that mentioned: 1

Very Likely Science (80)

pypi: Underscore

Obfuscating code by changing the variable names to underscores
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: RTNsurvival

Survival analysis using transcriptional networks inferred by the RTN package
Papers that mentioned: 1

Very Likely Science (100)

pypi: Resound

Audio clip fingerprinting library
Papers that mentioned: 1

Likely Science (40)

cran: metarep

Replicability-Analysis Tools for Meta-Analysis
Papers that mentioned: 1

Very Likely Science (87)

pypi: aea

Autonomous Economic Agent framework
Papers that mentioned: 1

Very Likely Science (95)

pypi: resident

Address processing
Papers that mentioned: 1

Very Likely Science (65)

cran: sharpr2

Estimating Regulatory Scores and Identifying ATAC-STARR Data
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: rgsepd

Gene Set Enrichment / Projection Displays
Papers that mentioned: 1

Very Likely Science (100)

cran: rlog

A Simple, Opinionated Logging Utility
Papers that mentioned: 1

Likely Science (50)

bioconductor: RGSEA

Random Gene Set Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: aerpy

a python library for reading ".aedat" format for event-camera logs.
Papers that mentioned: 1

Likely Science (55)

pypi: brange

A range which automatically deals with either direction.
Papers that mentioned: 1

Very Likely Science (65)

pypi: BM25

Papers that mentioned: 1

Very Likely Science (65)

pypi: rhyme

fly.
Papers that mentioned: 1

Very Likely Science (65)

pypi: bluesky

Experiment specification & orchestration.
Papers that mentioned: 1

Very Likely Science (100)

pypi: Blowout

Simulation of plasma blowout radius
Papers that mentioned: 1

Very Likely Science (100)

pypi: blowfish

Fast, efficient Blowfish cipher implementation in pure Python (3.4+).
Papers that mentioned: 1

Very Likely Science (65)

pypi: agal

A glance at logs
Papers that mentioned: 1

Very Likely Science (65)

pypi: blocker

Volume provisioning in Ansible with a cinder-like frontend
Papers that mentioned: 1

Very Likely Science (65)

pypi: rescale

A simple tool to resize and crop an image
Papers that mentioned: 1

Very Likely Science (65)

pypi: memprof

A memory profiler for Python. As easy as adding a decorator.
Papers that mentioned: 1

Very Likely Science (80)

cran: rLiDAR

LiDAR Data Processing and Visualization
Papers that mentioned: 1

Very Likely Science (100)

pypi: rhyolite

Simple creation of data classes from dictionaries.
Papers that mentioned: 1

Very Likely Science (100)

pypi: ssplot

ssplot aggregate stats file Python wrapper
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: profileScoreDist

Profile score distributions
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: proDA

Differential Abundance Analysis of Label-Free Mass Spectrometry Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: aggregation

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: powerTCR

Model-Based Comparative Analysis of the TCR Repertoire
Papers that mentioned: 1

Very Likely Science (100)

pypi: editdistance

Fast implementation of the edit distance(Levenshtein distance)
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: PoDCall

Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Papers that mentioned: 1

Very Likely Science (95)

pypi: blm

A simple model to describe the backlash effect into physics simulations
Papers that mentioned: 1

Very Likely Science (96)

cran: LINselect

Selection of Linear Estimators
Papers that mentioned: 1

Very Likely Science (75)

pypi: resc

RESC(RESource Checker)
Papers that mentioned: 1

Very Likely Science (65)

cran: lilikoi

Metabolomics Personalized Pathway Analysis Tool
Papers that mentioned: 1

Very Likely Science (85)

pypi: Agree

Simple argument resolution.
Papers that mentioned: 1

Very Likely Science (65)

cran: lifx

Control 'LIFX' Smart Light Bulbs
Papers that mentioned: 1

Very Likely Science (75)

cran: LifeTables

Two-Parameter HMD Model Life Table System
Papers that mentioned: 1

Very Likely Science (83)

pypi: aha

aha is a web application framework specialized for Google App Engine.
Papers that mentioned: 1

Likely Science (40)

cran: lexRankr

Extractive Summarization of Text with the LexRank Algorithm
Papers that mentioned: 1

Very Likely Science (89)

cran: learnr

Interactive Tutorials for R
Papers that mentioned: 1

Very Likely Science (100)

pypi: memoise

Memoise decorator.
Papers that mentioned: 1

Very Likely Science (80)

pypi: aiotg

Asynchronous Python API for building Telegram bots
Papers that mentioned: 1

Likely Science (40)

pypi: tem_circlefind

GUI utility for finding circles in images (especiall transmission electronmicrography)
Papers that mentioned: 1

Likely Science (40)

pypi: ife

You can get a nice global image feature!
Papers that mentioned: 1

Very Likely Science (80)

cran: PanelMatch

Matching Methods for Causal Inference with Time-Series Cross-Sectional Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: alg

Algorithm Learning Group.
Papers that mentioned: 1

Very Likely Science (90)

pypi: object

Papers that mentioned: 1

Unlikely Science (0)

pypi: Requiem

REST Client Constructor
Papers that mentioned: 1

Very Likely Science (65)

pypi: RiboMiner

A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Papers that mentioned: 1

Very Likely Science (100)

cran: tokenizers

Fast, Consistent Tokenization of Natural Language Text
Papers that mentioned: 1

Very Likely Science (100)

pypi: OceanColor

Deal with NASA Ocean Color data (search and download)
Papers that mentioned: 1

Very Likely Science (80)

pypi: pdfgen

Pyppeteer-based async python wrapper to convert html to pdf
Papers that mentioned: 1

Very Likely Science (65)

pypi: riboplot

Plot read counts of RiboSeq data from BAM format alignment files
Papers that mentioned: 1

Very Likely Science (80)

pypi: chord

Engaging visualisations, made easy.
Papers that mentioned: 1

Very Likely Science (75)

pypi: CMax

A simple circuit simulator
Papers that mentioned: 1

Very Likely Science (65)

pypi: ssd

Solid-State Drive Checker
Papers that mentioned: 1

Very Likely Science (65)

cran: MIICD

Multiple Imputation for Interval Censored Data
Papers that mentioned: 1

Very Likely Science (75)

cran: PKreport

A reporting pipeline for checking population pharmacokinetic model assumption
Papers that mentioned: 1

Very Likely Science (75)

pypi: ocr

Single Character OCR
Papers that mentioned: 1

Very Likely Science (65)

pypi: oem

Python Orbit Ephemeris Message (OEM) tools
Papers that mentioned: 1

Very Likely Science (85)

pypi: catcher

Microservices automated test tool.
Papers that mentioned: 1

Very Likely Science (65)

cran: pkr

Pharmacokinetics in R
Papers that mentioned: 1

Very Likely Science (75)

cran: landpred

Landmark Prediction of a Survival Outcome
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: nnNorm

Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
Papers that mentioned: 1

Very Likely Science (100)

pypi: cifti

Interface to handle CIFTI files
Papers that mentioned: 1

Very Likely Science (65)

pypi: OHM

Object HTTP Mapper
Papers that mentioned: 1

Very Likely Science (65)

cran: PKI

Public Key Infrastucture for R Based on the X.509 Standard
Papers that mentioned: 1

Very Likely Science (75)

pypi: circa

An approximate static execution tracer.
Papers that mentioned: 1

Very Likely Science (65)

cran: gge

Genotype Plus Genotype-by-Environment Biplots
Papers that mentioned: 1

Very Likely Science (77)

pypi: Alp

Alp time tools
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: NewWave

Negative binomial model for scRNA-seq
Papers that mentioned: 1

Very Likely Science (98)

cran: sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic Variations
Papers that mentioned: 1

Very Likely Science (100)

pypi: tarmac

Papers that mentioned: 1

Unlikely Science (0)

cran: uroot

Unit Root Tests for Seasonal Time Series
Papers that mentioned: 1

Very Likely Science (100)

cran: sigmajs

Interface to 'Sigma.js' Graph Visualization Library
Papers that mentioned: 1

Very Likely Science (85)

pypi: melo

Margin dependent Elo ratings and predictions.
Papers that mentioned: 1

Very Likely Science (80)

cran: sigora

Signature Overrepresentation Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: methtuple

methtuple
Papers that mentioned: 1

Very Likely Science (95)

cran: L1pack

Routines for L1 Estimation
Papers that mentioned: 1

Very Likely Science (75)

pypi: MetaArray

N-dimensional array with metadata such as axis titles, units, and column names.
Papers that mentioned: 1

Very Likely Science (80)