Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

cran: distory

Distance Between Phylogenetic Histories
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: ADImpute

Adaptive Dropout Imputer (ADImpute)
Papers that mentioned: 1

Very Likely Science (100)

cran: DiffXTables

Pattern Analysis Across Contingency Tables
Papers that mentioned: 1

Very Likely Science (93)

pypi: bcdi

BCDI: tools for pre(post)-processing Bragg and
Papers that mentioned: 1

Very Likely Science (100)

cran: diffeR

Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables
Papers that mentioned: 1

Very Likely Science (83)

cran: DiagrammeRsvg

Export DiagrammeR Graphviz Graphs as SVG
Papers that mentioned: 1

Very Likely Science (70)

cran: Modalclust

Hierarchical Modal Clustering
Papers that mentioned: 1

Very Likely Science (83)

pypi: pecan

A WSGI object-dispatching web framework, designed to be lean and fast, with few dependencies.
Papers that mentioned: 1

Very Likely Science (65)

pypi: fns

Reusable functions for use in ML projects
Papers that mentioned: 1

Very Likely Science (65)

pypi: mergedb

Papers that mentioned: 1

Very Likely Science (65)

pypi: pnet

Fast zero-copy packet creating and parsing module
Papers that mentioned: 1

Very Likely Science (65)

pypi: Bother

A script to produce heightmaps (primarily for OpenTTD) using real-world elevation data.
Papers that mentioned: 1

Very Likely Science (65)

pypi: botox

Boto3 Extended
Papers that mentioned: 1

Very Likely Science (65)

cran: desiR

Desirability Functions for Ranking, Selecting, and Integrating Data
Papers that mentioned: 1

Very Likely Science (100)

cran: MM4LMM

Inference of Linear Mixed Models Through MM Algorithm
Papers that mentioned: 1

Very Likely Science (60)

cran: LUCIDus

LUCID with Multiple Omics Data
Papers that mentioned: 1

Very Likely Science (83)

cran: DendSer

Dendrogram Seriation: Ordering for Visualisation
Papers that mentioned: 1

Very Likely Science (85)

pypi: bcbio-gff

Read and write Generic Feature Format (GFF) with Biopython integration.
Papers that mentioned: 1

Very Likely Science (100)

pypi: revamp

Data pre-processing
Papers that mentioned: 1

Very Likely Science (65)

cran: mlegp

Maximum Likelihood Estimates of Gaussian Processes
Papers that mentioned: 1

Very Likely Science (83)

cran: MLEcens

Computation of the MLE for Bivariate Interval Censored Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: epicenter

Python Package for interacting with the Forio Epicenter Platform
Papers that mentioned: 1

Very Likely Science (65)

cran: MLCM

Maximum Likelihood Conjoint Measurement
Papers that mentioned: 1

Very Likely Science (75)

cran: mkde

2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Papers that mentioned: 1

Very Likely Science (83)

cran: MixTwice

Large-Scale Hypothesis Testing by Variance Mixing
Papers that mentioned: 1

Very Likely Science (93)

pypi: boutiques

Schema for describing bash command-line tools
Papers that mentioned: 1

Very Likely Science (91)

pypi: edd-utils

Download Studies from an Experiment Data Depot Instance
Papers that mentioned: 1

Very Likely Science (100)

pypi: fmrb

Papers that mentioned: 1

Very Likely Science (65)

cran: mixRasch

Mixture Rasch Models with JMLE
Papers that mentioned: 1

Very Likely Science (75)

pypi: reverse_geocoder

Fast, offline reverse geocoder
Papers that mentioned: 1

Very Likely Science (85)

cran: dcminfo

Information Matrix for Diagnostic Classification Models
Papers that mentioned: 1

Very Likely Science (75)

cran: MixAll

Clustering and Classification using Model-Based Mixture Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: echarts

A echarts Python project
Papers that mentioned: 1

Very Likely Science (65)

cran: mixedCCA

Sparse Canonical Correlation Analysis for High-Dimensional Mixed Data
Papers that mentioned: 1

Very Likely Science (93)

cran: mlr3proba

Probabilistic Supervised Learning for 'mlr3'
Papers that mentioned: 1

Very Likely Science (75)

pypi: Amara

Library for XML processing in Python
Papers that mentioned: 1

Very Likely Science (65)

cran: dataverse

Client for Dataverse 4+ Repositories
Papers that mentioned: 1

Very Likely Science (100)

cran: miRtest

Combined miRNA- And mRNA-Testing
Papers that mentioned: 1

Very Likely Science (75)

cran: dataMaid

A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process
Papers that mentioned: 1

Very Likely Science (100)

pypi: allostery

This package deals with analysis of MD trajectories in order to understantd allostery.
Papers that mentioned: 1

Very Likely Science (75)

cran: optimParallel

Parallel Version of the L-BFGS-B Optimization Method
Papers that mentioned: 1

Very Likely Science (95)

cran: milorGWAS

Mixed Logistic Regression for Genome-Wide Analysis Studies (GWAS)
Papers that mentioned: 1

Very Likely Science (85)

cran: ggseg3d

Tri-Surface Mesh Plots for Brain Atlases
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions
Papers that mentioned: 1

Very Likely Science (100)

cran: Dict

R6 Based Key-Value Dictionary Implementation
Papers that mentioned: 1

Very Likely Science (75)

pypi: colomoto-docker

Helper script to run docker image colomoto/colomoto-docker
Papers that mentioned: 1

Very Likely Science (100)

cran: wql

Exploring Water Quality Monitoring Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: summation

Module for number summation
Papers that mentioned: 1

Very Likely Science (65)

cran: strvalidator

Process Control and Validation of Forensic STR Kits
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: BUSpaRse

kallisto | bustools R utilities
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: sights

Statistics and dIagnostic Graphs for HTS
Papers that mentioned: 1

Very Likely Science (89)

bioconductor: signatureSearch

Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: canprot

Chemical Metrics of Differentially Expressed Proteins
Papers that mentioned: 1

Very Likely Science (100)

cran: SubpathwayLNCE

Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory
Papers that mentioned: 1

Very Likely Science (85)

cran: dixon

Nearest Neighbour Contingency Table Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: SigsPack

Mutational Signature Estimation for Single Samples
Papers that mentioned: 1

Very Likely Science (100)

cran: desplot

Plotting Field Plans for Agricultural Experiments
Papers that mentioned: 1

Very Likely Science (91)

bioconductor: SimBindProfiles

Similar Binding Profiles
Papers that mentioned: 1

Very Likely Science (98)

pypi: configparser

Updated configparser from stdlib for earlier Pythons.
Papers that mentioned: 1

Very Likely Science (85)

pypi: exoskeleton

A library to create a bot / spider / crawler.
Papers that mentioned: 1

Very Likely Science (80)

cran: colocalization

Normalized Spatial Intensity Correlation
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: ddPCRclust

Clustering algorithm for ddPCR data
Papers that mentioned: 1

Very Likely Science (100)

cran: EmpiricalCalibration

Routines for Performing Empirical Calibration of Observational Study Estimates
Papers that mentioned: 1

Very Likely Science (100)

cran: BarcodingR

Species Identification using DNA Barcodes
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: similaRpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles
Papers that mentioned: 1

Very Likely Science (100)

cran: barcode

Render Barcode Distribution Plots
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: OpenStats

A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association
Papers that mentioned: 1

Very Likely Science (83)

cran: fastGHQuad

Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature
Papers that mentioned: 1

Very Likely Science (79)

cran: fastglm

Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen'
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: openPrimeR

Multiplex PCR Primer Design and Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: ggspectra

Extensions to 'ggplot2' for Radiation Spectra
Papers that mentioned: 1

Very Likely Science (100)

pypi: moses

TLS encrypted socks5 proxy
Papers that mentioned: 1

Very Likely Science (65)

pypi: Horton

A library of grids and other fine amusements. Contains a Grid and Grid-like data structures and optional modules for rendering them with pygame, creating cellular-automata simulations, games, and such things.
Papers that mentioned: 1

Likely Science (50)

bioconductor: simplifyEnrichment

Simplify Functional Enrichment Results
Papers that mentioned: 1

Very Likely Science (100)

pypi: loop

this is the simple loop function
Papers that mentioned: 1

Very Likely Science (65)

cran: biocompute

Create and Manipulate BioCompute Objects
Papers that mentioned: 1

Very Likely Science (81)

pypi: coremltools

Community Tools for Core ML
Papers that mentioned: 1

Very Likely Science (80)

pypi: gnb

A tool to build gene co-expression network using Methylation Microarrays
Papers that mentioned: 1

Very Likely Science (90)

cran: envirem

Generation of ENVIREM Variables
Papers that mentioned: 1

Very Likely Science (97)

bioconductor: periodicDNA

Set of tools to identify periodic occurrences of k-mers in DNA sequences
Papers that mentioned: 1

Very Likely Science (100)

cran: fat2Lpoly

Two-Locus Family-Based Association Test with Polytomous Outcome
Papers that mentioned: 1

Very Likely Science (75)

cran: fbati

Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
Papers that mentioned: 1

Very Likely Science (75)

cran: Delaporte

Statistical Functions for the Delaporte Distribution
Papers that mentioned: 1

Very Likely Science (100)

pypi: conformer

The convolutional module from the Conformer paper
Papers that mentioned: 1

Very Likely Science (86)

bioconductor: rqt

rqt: utilities for gene-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: MosT

auto test with interface
Papers that mentioned: 1

Very Likely Science (65)

cran: deepredeff

Deep Learning Prediction of Effectors
Papers that mentioned: 1

Very Likely Science (91)

cran: snapshot

Gadget N-body cosmological simulation code snapshot I/O utilities
Papers that mentioned: 1

Very Likely Science (93)

cran: fixest

Fast Fixed-Effects Estimations
Papers that mentioned: 1

Very Likely Science (75)

pypi: Congo

Portfolio is a Flask based framework that adds structure and map your views and templates together for rapid application development
Papers that mentioned: 1

Very Likely Science (65)

pypi: Toto

A Tornado based framework designed to accelerate web service development
Papers that mentioned: 1

Very Likely Science (65)

cran: BisRNA

Analysis of RNA Cytosine-5 Methylation
Papers that mentioned: 1

Very Likely Science (85)

cran: fdakma

Functional Data Analysis: K-Mean Alignment
Papers that mentioned: 1

Very Likely Science (93)

pypi: mot

Multi-threaded Optimization Toolbox
Papers that mentioned: 1

Very Likely Science (65)

cran: DDHFm

Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
Papers that mentioned: 1

Very Likely Science (93)

pypi: gltf

Load, modify, and save GLTF files.
Papers that mentioned: 1

Very Likely Science (80)

pypi: low

A json parser
Papers that mentioned: 1

Very Likely Science (65)

cran: smog

Structural Modeling by using Overlapped Group Penalty
Papers that mentioned: 1

Very Likely Science (100)

cran: smoother

Functions Relating to the Smoothing of Numerical Data
Papers that mentioned: 1

Very Likely Science (93)

cran: DCL

Claims Reserving under the Double Chain Ladder Model
Papers that mentioned: 1

Very Likely Science (75)