Packages with Software Mentions in Scientific Papers

pypi: modest

A modular estimation library
Papers that mentioned: 1

Very Likely Science (65)

cran: Dire

Linear Regressions with a Latent Outcome Variable
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: proActiv

Estimate Promoter Activity from RNA-Seq data
Papers that mentioned: 1

Very Likely Science (100)

pypi: colorednoise

Generate Gaussian (1/f)**beta noise (e.g. pink noise)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: proBAMr

Generating SAM file for PSMs in shotgun proteomics data
Papers that mentioned: 1

Very Likely Science (100)

cran: discSurv

Discrete Time Survival Analysis
Papers that mentioned: 1

Very Likely Science (93)

cran: diseasemapping

Modelling Spatial Variation in Disease Risk for Areal Data
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: proBatch

Tools for Diagnostics and Corrections of Batch Effects in Proteomics
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: proFIA

Preprocessing of FIA-HRMS data
Papers that mentioned: 1

Very Likely Science (70)

pypi: ImageMosaic

Papers that mentioned: 1

Very Likely Science (65)

cran: DistatisR

DiSTATIS Three Way Metric Multidimensional Scaling
Papers that mentioned: 1

Likely Science (58)

cran: distcrete

Discrete Distribution Approximations
Papers that mentioned: 1

Very Likely Science (100)

cran: distr6

The Complete R6 Probability Distributions Interface
Papers that mentioned: 1

Very Likely Science (100)

pypi: modular

Papers that mentioned: 1

Very Likely Science (65)

bioconductor: qcmetrics

A Framework for Quality Control
Papers that mentioned: 1

Very Likely Science (100)

pypi: modus

A simple modeling python lib
Papers that mentioned: 1

Very Likely Science (65)

cran: dmutate

Mutate Data Frames with Random Variates
Papers that mentioned: 1

Very Likely Science (81)

cran: DNMF

Discriminant Non-Negative Matrix Factorization
Papers that mentioned: 1

Very Likely Science (100)

cran: wtest

The W-Test for Genetic Interactions Testing
Papers that mentioned: 1

Very Likely Science (85)

cran: xbreed

Genomic Simulation of Purebred and Crossbred Populations
Papers that mentioned: 1

Very Likely Science (85)

pypi: impyute

Cross-sectional and time-series data imputation algorithms
Papers that mentioned: 1

Very Likely Science (90)

pypi: colorspacious

A powerful, accurate, and easy-to-use Python library for doing colorspace conversions
Papers that mentioned: 1

Very Likely Science (100)

pypi: industry

first dist
Papers that mentioned: 1

Very Likely Science (65)

cran: spcr

Sparse Principal Component Regression
Papers that mentioned: 1

Very Likely Science (93)

cran: donut

Nearest Neighbour Search with Variables on a Torus
Papers that mentioned: 1

Very Likely Science (100)

pypi: mofa

Mixture of factor analyzers
Papers that mentioned: 1

Very Likely Science (100)

cran: doremi

Dynamics of Return to Equilibrium During Multiple Inputs
Papers that mentioned: 1

Very Likely Science (75)

pypi: infotheory

Information theoretic analysis tools
Papers that mentioned: 1

Very Likely Science (75)

pypi: moiety-modeling

Moiety Modeling Implementation
Papers that mentioned: 1

Very Likely Science (100)

pypi: scanphyslog2bids

scanphyslog2bids: converts Philips physiology files to the BIDS-format
Papers that mentioned: 1

Very Likely Science (100)

pypi: instr

Simple wrapper for various SCPI-compliant instruments
Papers that mentioned: 1

Very Likely Science (65)

cran: spectrolab

Class and Methods for Spectral Data
Papers that mentioned: 1

Very Likely Science (75)

cran: DoTC

Distribution of Typicality Coefficients
Papers that mentioned: 1

Very Likely Science (75)

cran: dotCall64

Enhanced Foreign Function Interface Supporting Long Vectors
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: R3CPET

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RadioGx

Analysis of Large-Scale Radio-Genomic Data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome Sequencer System
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: RaggedExperiment

Representation of Sparse Experiments and Assays Across Samples
Papers that mentioned: 1

Very Likely Science (100)

pypi: colour

converts and manipulates various color representation (HSL, RVB, web, X11, ...)
Papers that mentioned: 1

Very Likely Science (100)

pypi: inter

Toolset for interactive command-line applications
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: randPack

Randomization routines for Clinical Trials
Papers that mentioned: 1

Very Likely Science (100)

cran: rvHPDT

Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
Papers that mentioned: 1

Very Likely Science (83)

cran: SPEDInstabR

Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept
Papers that mentioned: 1

Very Likely Science (75)

pypi: coltron

Package for generating and analyzing transcription networks
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: Rbowtie

R bowtie wrapper
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: antiProfiles

Implementation of gene expression anti-profiles
Papers that mentioned: 1

Very Likely Science (100)

cran: ELISAtools

ELISA Data Analysis with Batch Correction
Papers that mentioned: 1

Very Likely Science (93)

cran: driveR

Prioritizing Cancer Driver Genes Using Genomics Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: combine

A straightforward static site builder.
Papers that mentioned: 1

Likely Science (40)

pypi: interfaces

Simple decorator implementation of an interface.
Papers that mentioned: 1

Very Likely Science (65)

cran: BayesGOF

Bayesian Modeling via Frequentist Goodness-of-Fit
Papers that mentioned: 1

Very Likely Science (93)

cran: drtmle

Doubly-Robust Nonparametric Estimation and Inference
Papers that mentioned: 1

Very Likely Science (100)

pypi: Moliere

Psycopg wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: SpNMF

Supervised NMF
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: ARRmNormalization

Adaptive Robust Regression normalization for Illumina methylation data
Papers that mentioned: 1

Very Likely Science (100)

pypi: combo

A Python Toolbox for Machine Learning Model Combination
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: receptLoss

Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors
Papers that mentioned: 1

Very Likely Science (100)

pypi: morse

Convert strings to morse code.
Papers that mentioned: 1

Very Likely Science (65)

cran: dssd

Distance Sampling Survey Design
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: recoup

An R package for the creation of complex genomic profile plots
Papers that mentioned: 1

Very Likely Science (100)

cran: DSWE

Data Science for Wind Energy
Papers that mentioned: 1

Very Likely Science (100)

cran: EbayesThresh

Empirical Bayes Thresholding and Related Methods
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Papers that mentioned: 1

Very Likely Science (90)

cran: dupiR

Bayesian inference from count data using discrete uniform priors
Papers that mentioned: 1

Very Likely Science (85)

cran: dvir

Disaster Victim Identification
Papers that mentioned: 1

Very Likely Science (81)

pypi: iostream

iostream for Python
Papers that mentioned: 1

Likely Science (40)

pypi: moltemplate

A general cross-platform text-based molecule builder for LAMMPS
Papers that mentioned: 1

Very Likely Science (100)

pypi: ippai

Image Processing for Photoacoustic Imaging
Papers that mentioned: 1

Very Likely Science (65)

cran: SPSL

Site Percolation on Square Lattices (SPSL)
Papers that mentioned: 1

Very Likely Science (75)

pypi: scatterbrain

Papers that mentioned: 1

Very Likely Science (65)

cran: bayescount

Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
Papers that mentioned: 1

Very Likely Science (85)

cran: DysPIAData

Background and Pathway Data Used in 'DysPIA'
Papers that mentioned: 1

Very Likely Science (85)

pypi: iron

iron: the powerful but simple build tool using flows.
Papers that mentioned: 1

Very Likely Science (65)

cran: spTimer

Spatio-Temporal Bayesian Modelling
Papers that mentioned: 1

Very Likely Science (85)

cran: easyalluvial

Generate Alluvial Plots with a Single Line of Code
Papers that mentioned: 1

Very Likely Science (75)

cran: EBglmnet

Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Papers that mentioned: 1

Very Likely Science (85)

cran: echarts4r

Create Interactive Graphs with 'Echarts JavaScript' Version 5
Papers that mentioned: 1

Very Likely Science (75)

pypi: molyso

MOther machine anaLYsis SOftware
Papers that mentioned: 1

Very Likely Science (100)

cran: EBEN

Empirical Bayesian Elastic Net
Papers that mentioned: 1

Very Likely Science (85)

pypi: moveit

ns_server master events analyzer
Papers that mentioned: 1

Very Likely Science (65)

cran: ecolottery

Coalescent-Based Simulation of Ecological Communities
Papers that mentioned: 1

Very Likely Science (85)

pypi: scattertext

An NLP package to visualize interesting terms in text.
Papers that mentioned: 1

Very Likely Science (81)

bioconductor: attract

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BaalChIP

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Papers that mentioned: 1

Very Likely Science (100)

pypi: Scavager

Proteomics post-search algorithm
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BANDITS

BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Papers that mentioned: 1

Very Likely Science (100)

pypi: companion

Companion robot
Papers that mentioned: 1

Very Likely Science (65)

cran: ssfa

Spatial Stochastic Frontier Analysis
Papers that mentioned: 1

Very Likely Science (85)

cran: EcoNetGen

Simulate and Sample from Ecological Interaction Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: EFA.MRFA

Dimensionality Assessment Using Minimum Rank Factor Analysis
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: BBCAnalyzer

BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Papers that mentioned: 1

Very Likely Science (90)

pypi: moment

Dealing with dates and times should be easy
Papers that mentioned: 1

Very Likely Science (65)

pypi: isi

sample test
Papers that mentioned: 1

Very Likely Science (65)

cran: SSRA

Sakai Sequential Relation Analysis
Papers that mentioned: 1

Very Likely Science (93)

cran: edmdata

Data Sets for Psychometric Modeling
Papers that mentioned: 1

Very Likely Science (100)

cran: EDOIF

Empirical Distribution Ordering Inference Framework (EDOIF)
Papers that mentioned: 1

Very Likely Science (100)

pypi: scd

Something Completely different
Papers that mentioned: 1

Very Likely Science (65)

cran: EdSurvey

Analysis of NCES Education Survey and Assessment Data
Papers that mentioned: 1

Very Likely Science (85)

cran: eesim

Simulate and Evaluate Time Series for Environmental Epidemiology
Papers that mentioned: 1

Very Likely Science (100)

pypi: momepy

Urban Morphology Measuring Toolkit
Papers that mentioned: 1

Very Likely Science (100)