bioconductor: ctsGE
Clustering of Time Series Gene Expression data
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pypi: configobj
Config file reading, writing and validation.
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bioconductor: cytomapper
Visualization of highly multiplexed imaging data in R
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pypi: sci-hub
PDF Downloader with SCI-HUB
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bioconductor: DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
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cran: strvalidator
Process Control and Validation of Forensic STR Kits
Papers that mentioned: 1
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bioconductor: sights
Statistics and dIagnostic Graphs for HTS
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bioconductor: signatureSearch
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
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cran: SubpathwayLNCE
Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory
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bioconductor: SigsPack
Mutational Signature Estimation for Single Samples
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bioconductor: SimBindProfiles
Similar Binding Profiles
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pypi: configparser
Updated configparser from stdlib for earlier Pythons.
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pypi: exoskeleton
A library to create a bot / spider / crawler.
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cran: colocalization
Normalized Spatial Intensity Correlation
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bioconductor: ddPCRclust
Clustering algorithm for ddPCR data
Papers that mentioned: 1
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bioconductor: similaRpeak
Metrics to estimate a level of similarity between two ChIP-Seq profiles
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cran: fastGHQuad
Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature
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cran: fastglm
Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen'
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pypi: moses
TLS encrypted socks5 proxy
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bioconductor: simplifyEnrichment
Simplify Functional Enrichment Results
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pypi: loop
this is the simple loop function
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cran: fat2Lpoly
Two-Locus Family-Based Association Test with Polytomous Outcome
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cran: fbati
Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
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pypi: conformer
The convolutional module from the Conformer paper
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pypi: MosT
auto test with interface
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cran: fixest
Fast Fixed-Effects Estimations
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pypi: Congo
Portfolio is a Flask based framework that adds structure and map your views and templates together for rapid application development
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cran: fdakma
Functional Data Analysis: K-Mean Alignment
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pypi: mot
Multi-threaded Optimization Toolbox
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pypi: gltf
Load, modify, and save GLTF files.
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pypi: low
A json parser
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cran: FeatureHashing
Creates a Model Matrix via Feature Hashing with a Formula Interface
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cran: fExtremes
Rmetrics - Modelling Extreme Events in Finance
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pypi: conj
Python conjugation module for Turkish
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cran: s4vd
Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection
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bioconductor: soGGi
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals
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pypi: motiffinder
A novel approach to motif identification in proteins
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pypi: tr
tr
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cran: ffp
Fully Flexible Probabilities for Stress Testing and Portfolio Construction
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cran: fic
Focused Information Criteria for Model Comparison
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bioconductor: SOMNiBUS
Smooth modeling of bisulfite sequencing
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pypi: ltr
A fast Learning to Rank library based on RankLib
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cran: filematrix
File-Backed Matrix Class with Convenient Read and Write Access
Papers that mentioned: 1
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cran: spatialprobit
Spatial Probit Models
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cran: fitbitScraper
Scrapes Data from Fitbit
Papers that mentioned: 1
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pypi: macroscope
The macroscope command line interface
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pypi: conodictor
Prediction and classification of conopeptides
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pypi: motu-client
Extract and download gridded data through a python command line from Motu web server. Used in CMEMS context http://marine.copernicus.eu/
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bioconductor: derfinderPlot
Plotting functions for derfinder
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pypi: olga
Compute generation probability of CDR3 sequences
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cran: flexCWM
Flexible Cluster-Weighted Modeling
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cran: swa
Subsampling Winner Algorithm for Classification
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cran: swirl
Learn R, in R
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bioconductor: sRACIPE
Systems biology tool to simulate gene regulatory circuits
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pypi: ConSequences
Suite to delineate contiguous and conserved sequences from assemblies and search for their presence in raw sequencing data.
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bioconductor: sscu
Strength of Selected Codon Usage
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pypi: mOTUlizer
making OTUs from genomes, and stats on them. and even core-genomes
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pypi: glycowork
Package for processing and analyzing glycans
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cran: flora
Tools for Interacting with the Brazilian Flora 2020
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pypi: scikit-network
Graph algorithms
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pypi: mountainsort4
Spike sorting using MountainSort4 algorithm
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cran: fMultivar
Rmetrics - Modeling of Multivariate Financial Return Distributions
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cran: focusedMDS
Focused, Interactive Multidimensional Scaling
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pypi: mak
A simple maximum finder
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bioconductor: Streamer
Enabling stream processing of large files
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cran: fortunes
R Fortunes
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pypi: constraints
Returns a constrained subset of the members of a dict of dicts
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cran: fsbrain
Managing and Visualizing Brain Surface Data
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pypi: ContactVis
Contact map plotting for predicted protein residue-residue contacts.
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pypi: Glymur
Python interface to OpenJPEG library for reading and writing JPEG 2000 images.
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cran: fsr
Handling Fuzzy Spatial Data
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pypi: inchworm
A small Python module for progress bars in IPython
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cran: funLBM
Model-Based Co-Clustering of Functional Data
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cran: funrar
Functional Rarity Indices Computation
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cran: funreg
Functional Regression for Irregularly Timed Data
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pypi: scikit-ribo
A scikit framework for joint analysis of Riboseq and RNAseq data
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cran: fuzzyforest
Fuzzy Forests
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pypi: movement
Analysis of body movement
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pypi: movie
movie package
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cran: TELP
Social Representation Theory Application: The Free Evocation of Words Technique
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pypi: sqwrl
Sqlachemy Query WRapper Library - pandas-like SQL
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pypi: context-explorer
Context aware analysis of cell fate acquisitions
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pypi: gmail
Simple library to send email using GMail (includes background worker and logging classes) [Python 2/3 support]
Papers that mentioned: 1
Very Likely Science (65)
pypi: MovieFinder
Script for finding movies by given term. It will get all the movies from database that contain a given term and print them out along with the year they were released. Results will be printed in chronological order, from newer to older. There will also be a folder with the same name as input term that will contain posters of all movies that were found, if available.
Papers that mentioned: 1
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cran: GauPro
Gaussian Process Fitting
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pypi: contra
High-performance containers with a Python interface
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cran: gatepoints
Easily Gate or Select Points on a Scatter Plot
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pypi: mpa
Papers that mentioned: 1
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pypi: MPBS
zmq based MultiPublisher-Broker-multiSubscriber framework
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cran: gbs2ploidy
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
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pypi: mpc
A fast and differentiable MPC solver for PyTorch.
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cran: GCPM
Generalized Credit Portfolio Model
Papers that mentioned: 1
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cran: gen3sis
General Engine for Eco-Evolutionary Simulations
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bioconductor: timeOmics
Time-Course Multi-Omics data integration
Papers that mentioned: 1
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cran: geneSignatureFinder
A Gene-signatures finder tools
Papers that mentioned: 1
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pypi: mpes
Distributed data processing routines for multidimensional photoemission spectroscopy (MPES)
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cran: GeNetIt
Spatial Graph-Theoretic Genetic Gravity Modelling
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cran: geno2proteo
Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci
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pypi: scikit-spectra
Spectroscopy in Python built on Pandas.
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cran: GenOrd
Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions
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