Packages with Software Mentions in Scientific Papers

The (Adaptive) Elastic Net and Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms
Papers that mentioned: 1

Very Likely Science (93)

pypi: HIFI-SE

HIFI-SE
Papers that mentioned: 1

Likely Science (55)

pypi: highlighter

Easy-to-use PEP 508 markers
Papers that mentioned: 1

Very Likely Science (65)

pypi: contrastive

Python library for performing unsupervised learning (e.g. PCA) in contrastive settings, where one is interested in finding directions and patterns that exist one dataset, but not the other
Papers that mentioned: 1

Very Likely Science (100)

cran: geodata

Download Geographic Data
Papers that mentioned: 1

Very Likely Science (81)

pypi: evan

Evaluation framework for GANs for video generation
Papers that mentioned: 1

Very Likely Science (71)

cran: DistatisR

DiSTATIS Three Way Metric Multidimensional Scaling
Papers that mentioned: 1

Likely Science (58)

pypi: seqanpy

Fast pairwise sequence alignment using SeqAn
Papers that mentioned: 1

Very Likely Science (85)

pypi: scikit-spectra

Spectroscopy in Python built on Pandas.
Papers that mentioned: 1

Very Likely Science (100)

cran: geno2proteo

Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci
Papers that mentioned: 1

Very Likely Science (75)

pypi: stb

Security Tool Builder (STB): Tool for creating hacking tools
Papers that mentioned: 1

Very Likely Science (65)

cran: readtext

Import and Handling for Plain and Formatted Text Files
Papers that mentioned: 1

Very Likely Science (100)

cran: GeNetIt

Spatial Graph-Theoretic Genetic Gravity Modelling
Papers that mentioned: 1

Very Likely Science (100)

cran: qat

Quality Assurance Toolkit
Papers that mentioned: 1

Very Likely Science (75)

pypi: hourly

A time tracking tool for git repos
Papers that mentioned: 1

Likely Science (40)

cran: qs

Quick Serialization of R Objects
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: timeOmics

Time-Course Multi-Omics data integration
Papers that mentioned: 1

Very Likely Science (100)

cran: gen3sis

General Engine for Eco-Evolutionary Simulations
Papers that mentioned: 1

Very Likely Science (100)

cran: saves

Fast load variables
Papers that mentioned: 1

Very Likely Science (75)

cran: GCPM

Generalized Credit Portfolio Model
Papers that mentioned: 1

Very Likely Science (80)

pypi: experimentator

Experiment builder
Papers that mentioned: 1

Very Likely Science (90)

cran: qvcalc

Quasi Variances for Factor Effects in Statistical Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: MPBS

zmq based MultiPublisher-Broker-multiSubscriber framework
Papers that mentioned: 1

Very Likely Science (65)

pypi: mpa

Papers that mentioned: 1

Very Likely Science (65)

cran: gatepoints

Easily Gate or Select Points on a Scatter Plot
Papers that mentioned: 1

Very Likely Science (100)

cran: scatr

Create Scatter Plots with Marginal Density or Box Plots
Papers that mentioned: 1

Very Likely Science (75)

pypi: nbdime

Diff and merge of Jupyter Notebooks
Papers that mentioned: 1

Very Likely Science (75)

pypi: MovieFinder

Script for finding movies by given term. It will get all the movies from database that contain a given term and print them out along with the year they were released. Results will be printed in chronological order, from newer to older. There will also be a folder with the same name as input term that will contain posters of all movies that were found, if available.
Papers that mentioned: 1

Likely Science (40)

pypi: gmail

Simple library to send email using GMail (includes background worker and logging classes) [Python 2/3 support]
Papers that mentioned: 1

Very Likely Science (65)

pypi: sqwrl

Sqlachemy Query WRapper Library - pandas-like SQL
Papers that mentioned: 1

Very Likely Science (65)

pypi: movement

Analysis of body movement
Papers that mentioned: 1

Very Likely Science (100)

pypi: ipd

Integrated Project Deployer
Papers that mentioned: 1

Very Likely Science (65)

pypi: seqgen

Command line script and Python class for generating genetic sequence data in FASTA format.
Papers that mentioned: 1

Very Likely Science (100)

cran: fuzzyforest

Fuzzy Forests
Papers that mentioned: 1

Very Likely Science (75)

cran: sdafilter

Symmetrized Data Aggregation
Papers that mentioned: 1

Very Likely Science (75)

cran: funLBM

Model-Based Co-Clustering of Functional Data
Papers that mentioned: 1

Very Likely Science (75)

cran: redlistr

Tools for the IUCN Red List of Ecosystems and Species
Papers that mentioned: 1

Very Likely Science (100)

pypi: Glymur

Python interface to OpenJPEG library for reading and writing JPEG 2000 images.
Papers that mentioned: 1

Very Likely Science (100)

pypi: ContactVis

Contact map plotting for predicted protein residue-residue contacts.
Papers that mentioned: 1

Very Likely Science (75)

cran: fsbrain

Managing and Visualizing Brain Surface Data
Papers that mentioned: 1

Very Likely Science (100)

cran: sglasso

Lasso Method for RCON(V,E) Models
Papers that mentioned: 1

Very Likely Science (75)

cran: sgt

Skewed Generalized T Distribution Tree
Papers that mentioned: 1

Very Likely Science (83)

cran: shinymeta

Export Domain Logic from Shiny using Meta-Programming
Papers that mentioned: 1

Very Likely Science (83)

cran: shinylogs

Record Everything that Happens in a 'Shiny' Application
Papers that mentioned: 1

Very Likely Science (90)

pypi: neighborhood

Neighborhood Algorithm Optimization and Ensemble Appraisal
Papers that mentioned: 1

Very Likely Science (100)

pypi: neighbors

A Python package for performing collaborative filtering on social and emotion datasets
Papers that mentioned: 1

Very Likely Science (100)

pypi: Neil

A utility program to generate boilerplate code/text from templates.
Papers that mentioned: 1

Unlikely Science (15)

pypi: plant

Filesystem for humans
Papers that mentioned: 1

Very Likely Science (85)

pypi: i2i

Tools to build adapters for one interface to talk to another
Papers that mentioned: 1

Very Likely Science (65)

pypi: ide

Papers that mentioned: 1

Very Likely Science (65)

pypi: ideal

Implementation of the iDEAL v3.3.1 specification in Python.
Papers that mentioned: 1

Very Likely Science (65)

pypi: nestly

Nestly is a collection of functions designed to make running software with combinatorial choices of parameters easier.
Papers that mentioned: 1

Very Likely Science (80)

pypi: seq-tools

Python tools for working with biological sequence data
Papers that mentioned: 1

Very Likely Science (100)

cran: slider

Sliding Window Functions
Papers that mentioned: 1

Very Likely Science (83)

pypi: mak

A simple maximum finder
Papers that mentioned: 1

Very Likely Science (65)

cran: focusedMDS

Focused, Interactive Multidimensional Scaling
Papers that mentioned: 1

Very Likely Science (75)

pypi: noisifier

Add label noise to your dataset
Papers that mentioned: 1

Very Likely Science (65)

cran: fMultivar

Rmetrics - Modeling of Multivariate Financial Return Distributions
Papers that mentioned: 1

Very Likely Science (85)

pypi: scikit-network

Graph algorithms
Papers that mentioned: 1

Very Likely Science (100)

cran: flora

Tools for Interacting with the Brazilian Flora 2020
Papers that mentioned: 1

Very Likely Science (77)

pypi: glycowork

Package for processing and analyzing glycans
Papers that mentioned: 1

Very Likely Science (100)

cran: spant

MR Spectroscopy Analysis Tools
Papers that mentioned: 1

Very Likely Science (100)

cran: sparkline

'jQuery' Sparkline 'htmlwidget'
Papers that mentioned: 1

Very Likely Science (75)

pypi: mOTUlizer

making OTUs from genomes, and stats on them. and even core-genomes
Papers that mentioned: 1

Very Likely Science (71)

bioconductor: sscu

Strength of Selected Codon Usage
Papers that mentioned: 1

Very Likely Science (90)

cran: swirl

Learn R, in R
Papers that mentioned: 1

Very Likely Science (75)

pypi: netzwerk

Peer to peer decentralised networking package
Papers that mentioned: 1

Very Likely Science (75)

cran: swa

Subsampling Winner Algorithm for Classification
Papers that mentioned: 1

Very Likely Science (93)

pypi: imgcrop

Simple image augmentation library focusing on random geometric cropping.
Papers that mentioned: 1

Very Likely Science (80)

cran: flexCWM

Flexible Cluster-Weighted Modeling
Papers that mentioned: 1

Very Likely Science (85)

pypi: noisy

Noise of different colors
Papers that mentioned: 1

Very Likely Science (80)

pypi: olga

Compute generation probability of CDR3 sequences
Papers that mentioned: 1

Very Likely Science (100)

pypi: NeuNorm

neutron normalization data
Papers that mentioned: 1

Very Likely Science (100)

pypi: sequitur

Autoencoders for sequential data
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: derfinderPlot

Plotting functions for derfinder
Papers that mentioned: 1

Very Likely Science (100)

cran: sparrpowR

Power Analysis to Detect Spatial Relative Risk Clusters
Papers that mentioned: 1

Very Likely Science (100)

pypi: IMMP

A modular processing platform for instant messages.
Papers that mentioned: 1

Very Likely Science (65)

pypi: neural

Simple neural network implementation in Python based on Andrew Ng's Machine Learning online course.
Papers that mentioned: 1

Very Likely Science (75)

cran: SparseDC

Implementation of SparseDC Algorithm
Papers that mentioned: 1

Very Likely Science (93)

cran: sparta

Sparse Tables
Papers that mentioned: 1

Very Likely Science (75)