Packages with Software Mentions in Scientific Papers

pypi: dragnet

Extract the main article content (and optionally comments) from a web page
Papers that mentioned: 1

Very Likely Science (75)

cran: SimPhe

Tools to Simulate Phenotype(s) with Epistatic Interaction
Papers that mentioned: 1

Very Likely Science (75)

pypi: ioLab

ioLab response box library
Papers that mentioned: 1

Very Likely Science (65)

pypi: data-loader

Papers that mentioned: 1

Very Likely Science (65)

pypi: droid

Droid is a remote communication application created to communicate with Android devices on the local network over the Android debug bridge (adb). Available as a CLI or GUI.
Papers that mentioned: 1

Likely Science (50)

cran: cobs

Constrained B-Splines (Sparse Matrix Based)
Papers that mentioned: 1

Very Likely Science (75)

pypi: scale

Single-Cell ATAC-seq Analysis via Latent feature Extraciton
Papers that mentioned: 1

Very Likely Science (96)

pypi: hermes

Hermes is an extensible XMPP-based chatroom server written in Python.
Papers that mentioned: 1

Likely Science (40)

pypi: drop

Uploads data to a remote www directory via scp and returns a public url.
Papers that mentioned: 1

Very Likely Science (80)

pypi: DataExtraction

this is a test package.
Papers that mentioned: 1

Very Likely Science (65)

cran: rules

Model Wrappers for Rule-Based Models
Papers that mentioned: 1

Very Likely Science (83)

cran: DAKS

Data Analysis and Knowledge Spaces
Papers that mentioned: 1

Very Likely Science (85)

pypi: lara

Lara - A web framework in python (you can create your own ;))
Papers that mentioned: 1

Very Likely Science (65)

pypi: launch

Launch: An Application Launcher
Papers that mentioned: 1

Very Likely Science (65)

pypi: DRV

Discrete random variables in Python made easy.
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: seqPattern

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Papers that mentioned: 1

Very Likely Science (90)

pypi: libtorrent

Python bindings for libtorrent-rasterbar
Papers that mentioned: 1

Very Likely Science (65)

cran: D3GB

Interactive Genome Browser with R
Papers that mentioned: 1

Very Likely Science (75)

pypi: hetnetpy

Hetnets in Python
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: miQC

Flexible, probabilistic metrics for quality control of scRNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

pypi: secimtools

'Metabolomics tools from the SECIM project',
Papers that mentioned: 1

Very Likely Science (100)

pypi: EpiTator

Annotators for extracting epidemiological information from text.
Papers that mentioned: 1

Very Likely Science (100)

cran: stepp

Subpopulation Treatment Effect Pattern Plot (STEPP)
Papers that mentioned: 1

Very Likely Science (75)

cran: stinepack

Stineman, a Consistently Well Behaved Method of Interpolation
Papers that mentioned: 1

Likely Science (50)

cran: stockR

Identifying Stocks in Genetic Data
Papers that mentioned: 1

Very Likely Science (93)

pypi: Darbe

RDS MySQL replication setup tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: nanomonsv

Python tools for detecting structural variation from nanopore sequence data
Papers that mentioned: 1

Very Likely Science (96)

cran: str2str

Convert R Objects from One Structure to Another
Papers that mentioned: 1

Very Likely Science (75)

pypi: dap

DAP (Data Access Protocol) client and server for Python.
Papers that mentioned: 1

Very Likely Science (80)

pypi: lmoments

L-Moment Algorithms in Python
Papers that mentioned: 1

Very Likely Science (75)

cran: lmDiallel

Linear Fixed/Mixed Effects Models for Diallel Crosses
Papers that mentioned: 1

Very Likely Science (85)

A module calculating quantities related to a network metric known as trophic coherence but now generalised to all networks, see Moutsinas, G., Shuaib, C., Guo, W., & Jarvis, S. (2019). Graph hierarchy and spread of infections. arXiv preprint arXiv:1908.04358 for more details.
Papers that mentioned: 1

Very Likely Science (100)

pypi: macbook

Python for iran.
Papers that mentioned: 1

Very Likely Science (65)

pypi: d2

CLI to get API JSON data and show as table
Papers that mentioned: 1

Very Likely Science (65)

cran: skewt

The Skewed Student-t Distribution
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: GNET2

Constructing gene regulatory networks from expression data through functional module inference
Papers that mentioned: 1

Very Likely Science (100)

pypi: iget

A small CLI
Papers that mentioned: 1

Very Likely Science (65)

cran: gnomonicM

Estimate Natural Mortality for Different Life Stages
Papers that mentioned: 1

Very Likely Science (75)

pypi: facets

Asset manager for Django.
Papers that mentioned: 1

Very Likely Science (65)

cran: ThermIndex

Calculate Thermal Indexes
Papers that mentioned: 1

Very Likely Science (75)

cran: tidyMicro

Papers that mentioned: 1

Unlikely Science (0)

pypi: materialize

Replace env files with etcd configurations.
Papers that mentioned: 1

Very Likely Science (65)

cran: tfplot

Time Frame User Utilities
Papers that mentioned: 1

Very Likely Science (75)

cran: tidystringdist

String Distance Calculation with Tidy Data Principles
Papers that mentioned: 1

Very Likely Science (75)

cran: GMCM

Fast Estimation of Gaussian Mixture Copula Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: seglearn

A template for scikit-learn compatible packages.
Papers that mentioned: 1

Very Likely Science (100)

pypi: cytoflow

Python tools for quantitative, reproducible flow cytometry analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: grapes

Helper for dataflow based programming
Papers that mentioned: 1

Very Likely Science (65)

pypi: MoCV

List and details of Computer Vision algorithms
Papers that mentioned: 1

Very Likely Science (75)

pypi: dts

Generate sequence of datatimes, like seq
Papers that mentioned: 1

Likely Science (40)

pypi: cyto

SBT Instruments' framework for Python-based applications
Papers that mentioned: 1

Likely Science (40)

pypi: memes

Fresh memes for your terminal!
Papers that mentioned: 1

Very Likely Science (65)

pypi: graper

A Spider FrameWork
Papers that mentioned: 1

Very Likely Science (65)

pypi: mesos

python bindings for Apache Mesos
Papers that mentioned: 1

Very Likely Science (65)

pypi: linea

Linear detrending for CHEOPS
Papers that mentioned: 1

Very Likely Science (65)

pypi: Cyrus

Papers that mentioned: 1

Very Likely Science (65)

cran: UPG

Efficient Bayesian Algorithms for Binary and Categorical Data Regression Models
Papers that mentioned: 1

Very Likely Science (93)

pypi: lineage

tools for genetic genealogy and the analysis of consumer DNA test results
Papers that mentioned: 1

Very Likely Science (65)

pypi: nanosimpy

The nano simulation python libary
Papers that mentioned: 1

Very Likely Science (75)

pypi: duckduckgo

Library for querying the Duck Duck Go API
Papers that mentioned: 1

Very Likely Science (65)

cran: listdtr

List-Based Rules for Dynamic Treatment Regimes
Papers that mentioned: 1

Very Likely Science (75)

cran: varclust

Variables Clustering
Papers that mentioned: 1

Very Likely Science (75)

pypi: scorecardpy

Credit Risk Scorecard
Papers that mentioned: 1

Very Likely Science (65)

pypi: Cylon

XMPP bot
Papers that mentioned: 1

Very Likely Science (65)

pypi: cyclops

cyclops is a high-performance gateway for sentry.
Papers that mentioned: 1

Very Likely Science (65)

pypi: Dumper

Tool to conveniently describe any Python datastructure
Papers that mentioned: 1

Very Likely Science (65)

cran: designmatch

Matched Samples that are Balanced and Representative by Design
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: fmrs

Variable Selection in Finite Mixture of AFT Regression and FMR Models
Papers that mentioned: 1

Very Likely Science (100)

pypi: msparser

Valgrind massif.out parser
Papers that mentioned: 1

Very Likely Science (65)

pypi: grammar

Python library for natural language processing
Papers that mentioned: 1

Very Likely Science (65)

cran: gendata

Generate and Modify Synthetic Datasets
Papers that mentioned: 1

Very Likely Science (75)

pypi: NMMSO

Python Implementation of the Niching Migratory Multi-Swarm Optimizer
Papers that mentioned: 1

Very Likely Science (65)

pypi: nms

A Non Maximal Suppression Python Package
Papers that mentioned: 1

Very Likely Science (65)

pypi: selinux

shim selinux module
Papers that mentioned: 1

Very Likely Science (65)

cran: gems

Generalized Multistate Simulation Model
Papers that mentioned: 1

Very Likely Science (85)

pypi: Organisms

This program is designed to perform a genetic algorithm global optimisation for nanoclusters.
Papers that mentioned: 1

Very Likely Science (90)

pypi: LinearAlgebra

Tools for working with matrices and vectors.
Papers that mentioned: 1

Very Likely Science (80)

cran: gbmt

Group-Based Multivariate Trajectory Modeling
Papers that mentioned: 1

Very Likely Science (85)

cran: gauseR

Lotka-Volterra Models for Gause's 'Struggle for Existence'
Papers that mentioned: 1

Very Likely Science (75)

cran: gapfill

Fill Missing Values in Satellite Data
Papers that mentioned: 1

Very Likely Science (81)

pypi: pirecorder

A python package for controlled and automated image and video recording with the raspberry pi
Papers that mentioned: 1

Very Likely Science (80)

cran: ctrlGene

Assess the Stability of Candidate Housekeeping Genes
Papers that mentioned: 1

Very Likely Science (75)

cran: gamboostMSM

Boosting Multistate Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: Psychotic

Cross-platform pure Python performance optimizer and 2008 April Fools joke.
Papers that mentioned: 1

Very Likely Science (65)

pypi: codon

Non-Stationary Codon Model Fitting
Papers that mentioned: 1

Very Likely Science (80)

pypi: cubature

Numerical integration technique
Papers that mentioned: 1

Very Likely Science (100)

pypi: pyModeS

Python Mode-S and ADS-B Decoder
Papers that mentioned: 1

Very Likely Science (65)

pypi: identifier

A utility for identifier
Papers that mentioned: 1

Likely Science (40)

cran: clustMD

Model Based Clustering for Mixed Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: pyxform

A Python package to create XForms for ODK Collect.
Papers that mentioned: 1

Very Likely Science (65)

pypi: qam

QAM is a simple RPC Framework which uses the AMQP Protocol as Transport Protocol.
Papers that mentioned: 1

Very Likely Science (65)

pypi: seplot

A front-end for Python PyX
Papers that mentioned: 1

Very Likely Science (85)

cran: furrr

Apply Mapping Functions in Parallel using Futures
Papers that mentioned: 1

Very Likely Science (100)

cran: stemmatology

Stemmatological Analysis of Textual Traditions
Papers that mentioned: 1

Very Likely Science (100)

pypi: revelation

Make awesome reveal.js presentations with revelation
Papers that mentioned: 1

Very Likely Science (65)

pypi: s3

Python module which connects to Amazon's S3 REST API
Papers that mentioned: 1

Very Likely Science (65)

pypi: cual-id

A package for creating and managing sample identifiers in comparative -omics datasets.
Papers that mentioned: 1

Very Likely Science (80)

pypi: sada

Simple Asynchronous Database API. sada is a lightweight wrapper around SQLite, MySQL, PostgreSQL with aio.
Papers that mentioned: 1

Likely Science (40)

pypi: sfs

Sound Field Synthesis Toolbox
Papers that mentioned: 1

Very Likely Science (80)

cran: fso

Fuzzy Set Ordination
Papers that mentioned: 1

Very Likely Science (83)