Packages with Software Mentions in Scientific Papers | Ecosyste.ms: Papers

pypi: ants

A human spider framework base on django
Papers that mentioned: 1

Very Likely Science (65)

cran: DSviaDRM

Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
Papers that mentioned: 1

Very Likely Science (75)

pypi: BenchExec

A Framework for Reliable Benchmarking and Resource Measurement.
Papers that mentioned: 1

Very Likely Science (100)

pypi: antspynet

A collection of deep learning architectures ported to the python language and tools for basic medical image processing.
Papers that mentioned: 1

Very Likely Science (100)

cran: DTMCPack

Suite of Functions Related to Discrete-Time Discrete-State Markov Chains
Papers that mentioned: 1

Very Likely Science (75)

cran: imagerExtra

Extra Image Processing Library Based on 'imager'
Papers that mentioned: 1

Very Likely Science (75)

pypi: fif

A command line tool for embedding any file into PNG, GIF, WAV file formats and decoding back.
Papers that mentioned: 1

Very Likely Science (65)

pypi: sqlcmd

A cross-platform, cross-database SQL command line tool
Papers that mentioned: 1

Very Likely Science (80)

cran: imagine

IMAGing engINEs, Tools for Application of Image Filters to Data Matrices
Papers that mentioned: 1

Very Likely Science (77)

pypi: aoctools

A CLI for working with Advent of Code (AOC) problems
Papers that mentioned: 1

Very Likely Science (65)

pypi: hqt

Hierarchical QuadTree
Papers that mentioned: 1

Very Likely Science (65)

pypi: fastseg

Fast Semantic Segmentation for PyTorch
Papers that mentioned: 1

Very Likely Science (80)

cran: dynsbm

Dynamic Stochastic Block Models
Papers that mentioned: 1

Very Likely Science (75)

pypi: fastscore

FastScore SDK
Papers that mentioned: 1

Very Likely Science (65)

cran: resourcer

Resource Resolver
Papers that mentioned: 1

Very Likely Science (90)

pypi: baycomp

Bayesian tests for comparison of classifiers
Papers that mentioned: 1

Very Likely Science (90)

pypi: Apack

Papers that mentioned: 1

Unlikely Science (0)

cran: eba

Elimination-by-Aspects Models
Papers that mentioned: 1

Very Likely Science (75)

cran: MedSurvey

Linear Mediation Analysis for Complex Surveys Using Balanced Repeated Replication
Papers that mentioned: 1

Very Likely Science (93)

cran: mefa

Multivariate Data Handling in Ecology and Biogeography
Papers that mentioned: 1

Very Likely Science (100)

cran: ecoCopula

Graphical Modelling and Ordination using Copulas
Papers that mentioned: 1

Very Likely Science (93)

pypi: anx

Papers that mentioned: 1

Unlikely Science (0)

cran: ecespa

Functions for Spatial Point Pattern Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: fastr

Workflow creation and batch execution environment.
Papers that mentioned: 1

Very Likely Science (80)

cran: multiclassPairs

Build MultiClass Pair-Based Classifiers using TSPs or RF
Papers that mentioned: 1

Very Likely Science (100)

cran: multicolor

Add Multiple Colors to your Console & RMarkdown Output
Papers that mentioned: 1

Very Likely Science (95)

cran: multidplyr

A Multi-Process 'dplyr' Backend
Papers that mentioned: 1

Very Likely Science (100)

cran: mpa

Papers that mentioned: 1

Unlikely Science (0)

cran: moderndive

Tidyverse-Friendly Introductory Linear Regression
Papers that mentioned: 1

Very Likely Science (100)

pypi: eurostat

Eurostat Python Package
Papers that mentioned: 1

Very Likely Science (80)

cran: modelDown

Make Static HTML Website for Predictive Models
Papers that mentioned: 1

Very Likely Science (60)

cran: mldr

Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
Papers that mentioned: 1

Very Likely Science (85)

cran: multinma

Bayesian Network Meta-Analysis of Individual and Aggregate Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: APScheduler

In-process task scheduler with Cron-like capabilities
Papers that mentioned: 1

Very Likely Science (100)

cran: edl

Toolbox for Error-Driven Learning Simulations with Two-Layer Networks
Papers that mentioned: 1

Very Likely Science (85)

cran: eegkit

Toolkit for Electroencephalography Data
Papers that mentioned: 1

Very Likely Science (83)

cran: multisensi

Multivariate Sensitivity Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: anndata

Annotated data.
Papers that mentioned: 1

Very Likely Science (100)

pypi: oga

Library for interacting with OpenGameArt.org assets
Papers that mentioned: 1

Likely Science (40)

bioconductor: BGmix

Bayesian models for differential gene expression
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: bgx

Bayesian Gene eXpression
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: BicARE

Biclustering Analysis and Results Exploration
Papers that mentioned: 1

Very Likely Science (100)

cran: MLGL

Multi-Layer Group-Lasso
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: biocGraph

Graph examples and use cases in Bioinformatics
Papers that mentioned: 1

Very Likely Science (100)

cran: ega

Error Grid Analysis
Papers that mentioned: 1

Very Likely Science (85)

pypi: sixgill

six-frame genome-inferred libraries for LC-MS/MS
Papers that mentioned: 1

Very Likely Science (80)

pypi: apg

Awesome project generation tool
Papers that mentioned: 1

Very Likely Science (65)

pypi: amer

Papers that mentioned: 1

Unlikely Science (0)

cran: eigenprcomp

Computes confidence intervals for principal components
Papers that mentioned: 1

Very Likely Science (75)

cran: imputeR

A General Multivariate Imputation Framework
Papers that mentioned: 1

Very Likely Science (91)

pypi: airpg

A package to automatically access the inverted repeats of archived plastid genomes
Papers that mentioned: 1

Very Likely Science (80)

cran: elasticIsing

Ising Network Estimation using Elastic Net and k-Fold Cross-Validation
Papers that mentioned: 1

Very Likely Science (85)

pypi: aiohttp

Async http client/server framework (asyncio)
Papers that mentioned: 1

Very Likely Science (100)

pypi: skynet

import skynet, if you dare
Papers that mentioned: 1

Very Likely Science (65)

pypi: aphrodite

ENOS API
Papers that mentioned: 1

Likely Science (40)

pypi: apikey

save and load API keys from a file
Papers that mentioned: 1

Very Likely Science (65)

cran: elsa

Entropy-Based Local Indicator of Spatial Association
Papers that mentioned: 1

Very Likely Science (75)

cran: imsig

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
Papers that mentioned: 1

Very Likely Science (100)

cran: independence

Fast Rank-Based Independence Testing
Papers that mentioned: 1

Very Likely Science (83)

bioconductor: biomvRCNS

Copy Number study and Segmentation for multivariate biological data
Papers that mentioned: 1

Very Likely Science (100)

pypi: alphashape

Toolbox for generating alpha shapes.
Papers that mentioned: 1

Very Likely Science (80)

pypi: AirStrip

Third-party js dependencies manager
Papers that mentioned: 1

Very Likely Science (65)

pypi: telosb

Serial Bootstrap Loader software for the MSP430 embedded processor.
Papers that mentioned: 1

Very Likely Science (65)

cran: iGasso

Statistical Tests and Utilities for Genetic Association
Papers that mentioned: 1

Very Likely Science (93)

bioconductor: BLMA

BLMA: A package for bi-level meta-analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: age

Actually good encryption. In Python.
Papers that mentioned: 1

Very Likely Science (84)

pypi: AEI

Arimaa Engine Interface tools
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: BUMHMM

Computational pipeline for computing probability of modification from structure probing experiment data
Papers that mentioned: 1

Very Likely Science (100)

pypi: fastools

FASTA/FASTQ analysis and manipulation toolkit.
Papers that mentioned: 1

Very Likely Science (90)

pypi: appdirs

A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
Papers that mentioned: 1

Very Likely Science (65)

pypi: alf

OAuth Client
Papers that mentioned: 1

Very Likely Science (65)

cran: ems

Epimed Solutions Collection for Data Editing, Analysis, and Benchmark of Health Units
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: cancerclass

Development and validation of diagnostic tests from high-dimensional molecular data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: CancerInSilico

An R interface for computational modeling of tumor progression
Papers that mentioned: 1

Very Likely Science (100)

pypi: applicake

A framework that simplifies the wrapping of external tools by standardizing input parameters, logging messages and output streams.
Papers that mentioned: 1

Very Likely Science (65)

pypi: acn

Papers that mentioned: 1

Unlikely Science (0)

cran: enetLTS

Robust and Sparse Methods for High Dimensional Linear and Binary and Multinomial Regression
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: MAGAR

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
Papers that mentioned: 1

Very Likely Science (100)

pypi: acid

Papers that mentioned: 1

Unlikely Science (0)

pypi: AccessControl

Security framework for Zope.
Papers that mentioned: 1

Very Likely Science (80)

pypi: ev3dev-c

LEGO MINDSTORMS EV3 Debian C library + Python, Ruby and Perl wrappers
Papers that mentioned: 1

Very Likely Science (65)

pypi: accept

Parse and order a HTTP Accept header.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: CexoR

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Papers that mentioned: 1

Very Likely Science (98)

bioconductor: CellTrails

Reconstruction, visualization and analysis of branching trajectories
Papers that mentioned: 1

Very Likely Science (100)

pypi: FilterDict

Store data in JSON format
Papers that mentioned: 1

Very Likely Science (65)

pypi: omnilog

A remote log watcher daemon that uses ssh, and multithreaded design.
Papers that mentioned: 1

Likely Science (40)

pypi: OpenWeb

Open Web Net Library
Papers that mentioned: 1

Very Likely Science (65)

cran: treeheatr

Heatmap-Integrated Decision Tree Visualizations
Papers that mentioned: 1

Very Likely Science (95)

pypi: rdrand

Python interface to Intel hardware rng
Papers that mentioned: 1

Very Likely Science (80)

cran: met

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: ChIPanalyser

ChIPanalyser: Predicting Transcription Factor Binding Sites
Papers that mentioned: 1

Very Likely Science (90)

pypi: approx

Set of tools for comparing complex objects
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ChIPsim

Simulation of ChIP-seq experiments
Papers that mentioned: 1

Very Likely Science (85)

pypi: SQLObject

Object-Relational Manager, aka database wrapper
Papers that mentioned: 1

Very Likely Science (65)

cran: meaRtools

Papers that mentioned: 1

Unlikely Science (0)

cran: shp2graph

Convert a SpatialLinesDataFrame Object to an 'igraph'-Class Object
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: clippda

A package for the clinical proteomic profiling data analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: sqlacodegen

Automatic model code generator for SQLAlchemy
Papers that mentioned: 1

Very Likely Science (65)

pypi: stage

Configuration over convention.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: ClusterJudge

Judging Quality of Clustering Methods using Mutual Information
Papers that mentioned: 1

Very Likely Science (90)