Packages with Software Mentions in Scientific Papers

cran: IPDfromKM

Map Digitized Survival Curves Back to Individual Patient Data
Papers that mentioned: 1

Very Likely Science (75)

pypi: aes

A simple tool for AES(Advanced Encryption Standard)
Papers that mentioned: 1

Very Likely Science (65)

cran: triplot

Explaining Correlated Features in Machine Learning Models
Papers that mentioned: 1

Very Likely Science (85)

pypi: aflow

Python API for searching AFLOW database.
Papers that mentioned: 1

Very Likely Science (84)

pypi: autolab

Python package for scientific experiments interfacing and automation
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: MCbiclust

Massive correlating biclusters for gene expression data and associated methods
Papers that mentioned: 1

Very Likely Science (100)

pypi: aga

aga grades assignments
Papers that mentioned: 1

Very Likely Science (65)

cran: irrNA

Coefficients of Interrater Reliability – Generalized for Randomly Incomplete Datasets
Papers that mentioned: 1

Very Likely Science (75)

pypi: reconcile

A reconciliation loop system.
Papers that mentioned: 1

Very Likely Science (65)

pypi: automlsa2

Automated Multi-Locus Sequence Analysis tool
Papers that mentioned: 1

Very Likely Science (100)

cran: IsoCorr

Correcting Drift and Carry-over in Continuous Isotopic Measurements
Papers that mentioned: 1

Very Likely Science (75)

A software package for the integration of metrological input into an agent-based system for the consideration of measurement uncertainty in current industrial manufacturing processes.
Papers that mentioned: 1

Very Likely Science (100)

cran: jackstraw

Statistical Inference for Unsupervised Learning
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: metaseqR2

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
Papers that mentioned: 1

Very Likely Science (70)

bioconductor: metavizr

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: methimpute

Imputation-guided re-construction of complete methylomes from WGBS data
Papers that mentioned: 1

Very Likely Science (90)

cran: jarbes

Just a Rather Bayesian Evidence Synthesis
Papers that mentioned: 1

Very Likely Science (85)

cran: JFE

Tools and GUI for Analyzing Time Series Data of Just Finance and Econometrics
Papers that mentioned: 1

Very Likely Science (83)

pypi: autotag

Tag suggestion according to text
Papers that mentioned: 1

Very Likely Science (65)

cran: JPEN

Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty
Papers that mentioned: 1

Very Likely Science (93)

cran: JuliaConnectoR

A Functionally Oriented Interface for Integrating 'Julia' with R
Papers that mentioned: 1

Very Likely Science (75)

cran: junctions

The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
Papers that mentioned: 1

Very Likely Science (75)

cran: kangar00

Kernel Approaches for Nonlinear Genetic Association Regression
Papers that mentioned: 1

Very Likely Science (85)

cran: kerdiest

Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
Papers that mentioned: 1

Very Likely Science (75)

pypi: aiml

An interpreter package for AIML, the Artificial Intelligence Markup Language
Papers that mentioned: 1

Likely Science (42)

cran: neo2R

Neo4j to R
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: MSGFplus

Papers that mentioned: 1

Unlikely Science (0)

bioconductor: MSnID

Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
Papers that mentioned: 1

Very Likely Science (100)

pypi: akkadian

Translating Akkadian signs to transliteration using NLP algorithms
Papers that mentioned: 1

Very Likely Science (95)

cran: acs

Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
Papers that mentioned: 1

Very Likely Science (83)

cran: KSPM

Kernel Semi-Parametric Models
Papers that mentioned: 1

Very Likely Science (75)

cran: kulife

Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
Papers that mentioned: 1

Very Likely Science (85)

pypi: IWD

Intelligent Water Drops Algorithm for TSP.
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: nuCpos

An R package for prediction of nucleosome positions
Papers that mentioned: 1

Very Likely Science (98)

cran: NetComp

Network Generation and Comparison
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: NetSAM

Network Seriation And Modularization
Papers that mentioned: 1

Very Likely Science (85)

cran: labeling

Axis Labeling
Papers that mentioned: 1

Very Likely Science (75)

cran: netdiffuseR

Analysis of Diffusion and Contagion Processes on Networks
Papers that mentioned: 1

Very Likely Science (100)

cran: aGE

Adaptive Set-Based Gene-Environment Interaction Test for Rare Variants
Papers that mentioned: 1

Very Likely Science (75)

cran: aggregation

p-Value Aggregation Methods
Papers that mentioned: 1

Very Likely Science (83)

cran: AHMbook

Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: npGSEA

Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)
Papers that mentioned: 1

Very Likely Science (100)

pypi: phono3py

This is the phono3py module.
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: omicplotR

Visual Exploration of Omic Datasets Using a Shiny App
Papers that mentioned: 1

Very Likely Science (90)

bioconductor: OMICsPCA

An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
Papers that mentioned: 1

Very Likely Science (100)

cran: alphabetr

Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells
Papers that mentioned: 1

Very Likely Science (88)

bioconductor: oneSENSE

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)
Papers that mentioned: 1

Very Likely Science (85)

cran: netgsa

Network-Based Gene Set Analysis
Papers that mentioned: 1

Very Likely Science (100)

cran: amelie

Anomaly Detection with Normal Probability Functions
Papers that mentioned: 1

Very Likely Science (75)

cran: ammistability

Additive Main Effects and Multiplicative Interaction Model Stability Parameters
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: pandaR

PANDA Algorithm
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: panelcn.mops

CNV detection tool for targeted NGS panel data
Papers that mentioned: 1

Very Likely Science (90)

cran: AnaCoDa

Analysis of Codon Data under Stationarity using a Bayesian Framework
Papers that mentioned: 1

Very Likely Science (100)

cran: lazyWeave

LaTeX Wrappers for R Users
Papers that mentioned: 1

Very Likely Science (75)

cran: lbm

Log Binomial Regression Model in Exact Method
Papers that mentioned: 1

Very Likely Science (85)

pypi: oneway

[Todo: description]
Papers that mentioned: 1

Likely Science (40)

cran: LeMaRns

Length-Based Multispecies Analysis by Numerical Simulation
Papers that mentioned: 1

Very Likely Science (85)

pypi: mCode

library for mcode electronic modules
Papers that mentioned: 1

Very Likely Science (65)

cran: lipidomeR

Integrative Visualizations of the Lipidome
Papers that mentioned: 1

Very Likely Science (85)

cran: list

Statistical Methods for the Item Count Technique and List Experiment
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: pcxn

Exploring, analyzing and visualizing functions utilizing the pcxnData package
Papers that mentioned: 1

Very Likely Science (98)

pypi: axis

A Python library for communicating with devices from Axis Communications
Papers that mentioned: 1

Very Likely Science (65)

pypi: azure-iot-device

Microsoft Azure IoT Device Library
Papers that mentioned: 1

Very Likely Science (80)

bioconductor: proteinProfiles

Protein Profiling
Papers that mentioned: 1

Very Likely Science (75)

pypi: phylograph

PhyloGraph is a python package for plotting evolutionary trees and data.
Papers that mentioned: 1

Very Likely Science (90)

cran: auRoc

Various Methods to Estimate the AUC
Papers that mentioned: 1

Very Likely Science (75)

cran: autothresholdr

An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Papers that mentioned: 1

Likely Science (54)

cran: av

Working with Audio and Video in R
Papers that mentioned: 1

Very Likely Science (83)

cran: sound

A Sound Interface for R
Papers that mentioned: 1

Very Likely Science (75)

cran: netplot

Beautiful Graph Drawing
Papers that mentioned: 1

Very Likely Science (100)

cran: BayesianAnimalTracker

Bayesian Melding of GPS and DR Path for Animal Tracking
Papers that mentioned: 1

Very Likely Science (60)

cran: BayesPostEst

Generate Postestimation Quantities for Bayesian MCMC Estimation
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: REBET

The subREgion-based BurdEn Test (REBET)
Papers that mentioned: 1

Very Likely Science (75)

bioconductor: RepViz

Replicate oriented Visualization of a genomic region
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: ribosomeProfilingQC

Ribosome Profiling Quality Control
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RIPAT

Retroviral Integration Pattern Analysis Tool (RIPAT)
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: RTopper

This package is designed to perform Gene Set Analysis across multiple genomic platforms
Papers that mentioned: 1

Very Likely Science (100)

cran: NetWeaver

Graphic Presentation of Complex Genomic and Network Data Analysis
Papers that mentioned: 1

Very Likely Science (100)

pypi: FlowIO

FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files
Papers that mentioned: 1

Very Likely Science (85)

cran: bigutilsr

Utility Functions for Large-scale Data
Papers that mentioned: 1

Very Likely Science (70)

cran: Bios2cor

From Biological Sequences and Simulations to Correlation Analysis
Papers that mentioned: 1

Very Likely Science (60)

bioconductor: scRecover

scRecover for imputation of single-cell RNA-seq data
Papers that mentioned: 1

Very Likely Science (100)

bioconductor: scry

Small-Count Analysis Methods for High-Dimensional Data
Papers that mentioned: 1

Very Likely Science (100)

pypi: babylon

ML implementations in Python.
Papers that mentioned: 1

Very Likely Science (65)

cran: BivRegBLS

Tolerance Interval and EIV Regression - Method Comparison Studies
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: SigFuge

SigFuge
Papers that mentioned: 1

Very Likely Science (90)

pypi: backbone

Tools for development with Backbone
Papers that mentioned: 1

Very Likely Science (65)

bioconductor: SimFFPE

NGS Read Simulator for FFPE Tissue
Papers that mentioned: 1

Very Likely Science (90)

pypi: backmap

Shows protein backbone structures in compact graphical form using Ramachandran numbers
Papers that mentioned: 1

Very Likely Science (80)

cran: bnma

Bayesian Network Meta-Analysis using 'JAGS'
Papers that mentioned: 1

Very Likely Science (85)

pypi: bacolonyzer

Analyse timeseries of QFA images
Papers that mentioned: 1

Very Likely Science (80)

cran: BOIN

Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Papers that mentioned: 1

Very Likely Science (85)

pypi: ebus

ebus - Event bus
Papers that mentioned: 1

Very Likely Science (65)

cran: breakDown

Model Agnostic Explainers for Individual Predictions
Papers that mentioned: 1

Very Likely Science (85)

pypi: BacterialTyper

Bacterial identification pipeline
Papers that mentioned: 1

Very Likely Science (100)

cran: Brq

Bayesian Analysis of Quantile Regression Models
Papers that mentioned: 1

Very Likely Science (98)

cran: lmfor

Functions for Forest Biometrics
Papers that mentioned: 1

Very Likely Science (75)

pypi: ballet

Core functionality for lightweight, collaborative data science projects
Papers that mentioned: 1

Very Likely Science (100)

cran: lmreg

Data and Functions Used in Linear Models and Regression with R: An Integrated Approach
Papers that mentioned: 1

Very Likely Science (85)

bioconductor: transcriptR

An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
Papers that mentioned: 1

Very Likely Science (90)